Detailed information NTG1170718

Bioinformatically predicted

Overview

• Name: dprA
• Type: Machinery gene
• Locus tag: ACOAL3_RS05165
• Genome accession: NZ_OZ239771
• Coordinates: 901348..901908 (-)
• Length: 186 a.a.
• NCBI ID: WP_419235608.1
• Uniprot ID: -
• Organism: Rickettsia endosymbiont of Nabis limbatus isolate 54738
• Function: ssDNA binding; loading RecA onto ssDNA (predicted from homology) DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
IS/Tn	900507..900911	901348..901908	flank	437

Gene organization within MGE regions

Location: 900507..901908

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACOAL3_RS05155	-	900507..900911 (-)	405	WP_419234586.1	IS630 family transposase	-
ACOAL3_RS05160	-	900919..901254 (-)	336	WP_419235606.1	helix-turn-helix domain-containing protein	-
ACOAL3_RS05165	dprA	901348..901908 (-)	561	WP_419235608.1	DNA-processing protein DprA	Machinery gene

Sequence

Protein

• Length: 186 a.a.
• Molecular weight: 20085.09 Da
• Isoelectric Point: 8.4756

>NTDB_id=1170718 ACOAL3_RS05165 WP_419235608.1 901348..901908(-) (dprA) [Rickettsia endosymbiont of Nabis limbatus isolate 54738]
MTYKSLEYSRLLFEIYDPPPVLSYKGNIDLLNHHKCIAIVGARNASANGRSFSHKIAAELAEEGYVTVSGLARGIDSSVH
QAATSKTIGVIAGGIDHIYPPENKKLFENLAEKGFIIAELPVGSTPLGKHFPQRNRIISGLALATVVIEASLKSGSLITA
RFALEQNREIFAVPGFPLDQRCQGIA

Nucleotide

• Length: 561 bp

>NTDB_id=1170718 ACOAL3_RS05165 WP_419235608.1 901348..901908(-) (dprA) [Rickettsia endosymbiont of Nabis limbatus isolate 54738]
ATCACATATAAATCTCTAGAATATTCACGATTATTATTTGAAATTTATGATCCCCCGCCAGTATTAAGCTATAAAGGTAA
TATAGATTTACTAAATCATCATAAATGTATTGCGATAGTTGGAGCTAGAAACGCCTCAGCAAATGGGAGAAGCTTTTCTC
ATAAAATTGCTGCCGAGTTAGCAGAAGAGGGGTATGTAACTGTTTCAGGCTTAGCAAGAGGAATAGATAGCAGTGTGCAT
CAAGCAGCAACTTCTAAAACTATTGGAGTTATTGCTGGCGGTATTGATCATATATATCCACCAGAAAACAAAAAATTATT
TGAAAATTTGGCAGAAAAGGGGTTTATAATAGCTGAATTACCTGTAGGATCTACGCCACTTGGTAAGCATTTCCCGCAAC
GTAATAGAATAATATCTGGTCTTGCTCTTGCTACAGTAGTAATAGAAGCGAGCCTAAAATCTGGCTCTTTAATTACAGCA
AGATTTGCTCTTGAGCAAAATAGAGAAATTTTTGCCGTTCCAGGTTTTCCTTTAGATCAAAGATGTCAAGGTATAGCTTA
A

Domains

Predicted by InterproScan.

• DNA recombination-mediator protein A (DNA_processg_A) (2-184)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
dprA	Legionella pneumophila strain ERS1305867	47.619	100	0.484
dprA	Bacillus subtilis subsp. subtilis str. 168	48.876	95.699	0.468
dprA	Acinetobacter baumannii strain A118	46.667	96.774	0.452
dprA	Acinetobacter baumannii D1279779	46.667	96.774	0.452
dprA	Lactococcus lactis subsp. cremoris KW2	48.538	91.935	0.446
dprA/cilB/dalA	Streptococcus mitis SK321	46.111	96.774	0.446
dprA	Vibrio cholerae strain A1552	46.111	96.774	0.446
dprA/cilB/dalA	Streptococcus pneumoniae Rx1	45.556	96.774	0.441
dprA/cilB/dalA	Streptococcus pneumoniae D39	45.556	96.774	0.441
dprA/cilB/dalA	Streptococcus pneumoniae R6	45.556	96.774	0.441
dprA/cilB/dalA	Streptococcus pneumoniae TIGR4	45.556	96.774	0.441
dprA/cilB/dalA	Streptococcus mitis NCTC 12261	45.556	96.774	0.441
dprA	Glaesserella parasuis strain SC1401	45.506	95.699	0.435
dprA	Streptococcus mutans UA159	44.751	97.312	0.435
dprA	Haemophilus influenzae Rd KW20	42.553	100	0.43
dprA	Neisseria meningitidis strain C311	44.382	95.699	0.425
dprA	Neisseria gonorrhoeae MS11	44.382	95.699	0.425
dprA	Neisseria meningitidis MC58	44.382	95.699	0.425
dprA	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	41.361	100	0.425
dprA	Thermus thermophilus HB27	45.087	93.011	0.419
dprA	Neisseria gonorrhoeae strain FA1090	43.82	95.699	0.419
dprA	Staphylococcus aureus N315	40.957	100	0.414
dprA	Staphylococcus aureus MW2	40.957	100	0.414
dprA	Vibrio campbellii strain DS40M4	42.938	95.161	0.409
dprA	Acinetobacter baylyi ADP1	42.222	96.774	0.409
dprA	Riemerella anatipestifer ATCC 11845 = DSM 15868	40.223	96.237	0.387
dprA	Latilactobacillus sakei subsp. sakei 23K	39.888	95.699	0.382