Detailed information NTG1166578

Bioinformatically predicted

Overview

• Name: recA
• Type: Machinery gene
• Locus tag: AB5Y62_RS02520
• Genome accession: NZ_OZ078860
• Coordinates: 513490..514530 (+)
• Length: 346 a.a.
• NCBI ID: WP_004735435.1
• Uniprot ID: A0A1R3F051
• Organism: Vibrio splendidus isolate A06
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 508490..519530

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB5Y62_RS02505	rpoS	509033..510013 (+)	981	WP_004735404.1	RNA polymerase sigma factor RpoS	Regulator
AB5Y62_RS02510	mutS	510171..512732 (-)	2562	WP_102536729.1	DNA mismatch repair protein MutS	-
AB5Y62_RS02515	pncC	512856..513350 (+)	495	WP_029406152.1	nicotinamide-nucleotide amidase	-
AB5Y62_RS02520	recA	513490..514530 (+)	1041	WP_004735435.1	recombinase RecA	Machinery gene
AB5Y62_RS02525	alaS	514854..517436 (+)	2583	WP_368084104.1	alanine--tRNA ligase	-
AB5Y62_RS02530	-	517657..518838 (+)	1182	WP_081327410.1	aspartate kinase	-
AB5Y62_RS02535	csrA	518931..519128 (+)	198	WP_004415691.1	carbon storage regulator CsrA	-

Sequence

Protein

• Length: 346 a.a.
• Molecular weight: 37350.86 Da
• Isoelectric Point: 5.0836

>NTDB_id=1166578 AB5Y62_RS02520 WP_004735435.1 513490..514530(+) (recA) [Vibrio splendidus isolate A06]
MDENKQKALAAALGQIEKQFGKGSIMRLGDNRTMDVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIA
AAQRVGKTCAFVDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVLVIDSVAALTPKAEIEGEMGD
SHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKDGDEVVGNE
TRIKVVKNKIAAPFKQAETQILYGKGFNREGELIDLGVKNKLVEKAGAWYSYKGDKIGQGKSNSCKHLRENPEIALELDT
KLRELLLTPAVLEEKGAEKEEENEEL

Nucleotide

• Length: 1041 bp

>NTDB_id=1166578 AB5Y62_RS02520 WP_004735435.1 513490..514530(+) (recA) [Vibrio splendidus isolate A06]
ATGGACGAGAATAAACAAAAAGCGTTAGCTGCAGCCCTTGGTCAGATTGAAAAGCAATTTGGTAAAGGTTCTATCATGCG
TCTTGGTGATAACCGCACAATGGACGTAGAAACTATTTCTACAGGTTCTCTATCTCTAGATATCGCACTAGGTGCTGGTG
GCTTACCGATGGGACGTATCGTTGAAGTTTACGGTCCAGAATCATCAGGTAAAACAACGCTAACGCTTGAGCTTATTGCT
GCAGCGCAGAGAGTGGGTAAAACGTGTGCATTCGTGGATGCGGAACACGCACTGGACCCTATCTACGCTCAAAAGTTGGG
TGTTGATATCGATGCTTTGCTTGTATCTCAACCTGATACCGGTGAACAAGCTCTAGAAATCTGTGATGCACTGGCTCGCT
CAGGTGCTATCGATGTTCTTGTTATTGACTCGGTTGCTGCACTAACACCTAAAGCTGAGATCGAAGGCGAAATGGGCGAT
AGCCACATGGGTCTTCAAGCGCGTATGCTTTCTCAAGCAATGCGTAAGCTGACAGGTAACCTTAAACAGTCTAACTGTAT
GGCTATCTTCATTAACCAAATTCGTATGAAAATTGGTGTAATGTTCGGTAACCCAGAAACAACAACAGGTGGTAATGCAC
TTAAGTTCTACGCATCTGTTCGTCTTGATATTCGCCGTACTGGTGCAATCAAAGATGGTGATGAAGTTGTTGGTAACGAG
ACTCGTATCAAGGTTGTTAAGAACAAGATTGCTGCACCATTCAAACAAGCTGAAACTCAAATCCTTTACGGCAAAGGCTT
CAACCGCGAAGGTGAGCTTATCGATTTAGGTGTTAAGAATAAGCTAGTAGAGAAAGCGGGCGCTTGGTACAGCTACAAAG
GCGACAAGATCGGCCAAGGTAAATCGAACTCTTGTAAGCACCTACGTGAAAACCCAGAGATCGCTCTGGAACTTGACACT
AAGCTTCGTGAATTGCTACTGACTCCTGCTGTTCTTGAAGAGAAAGGCGCAGAGAAAGAAGAAGAAAACGAAGAGCTATA
A

Domains

Predicted by InterproScan.

• recA bacterial DNA recombination protein (RecA) (7-267)

3D structure

• AlphaFold DB: A0A1R3F051

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recA	Vibrio cholerae strain A1552	90.274	95.087	0.858
recA	Vibrio cholerae O1 biovar El Tor strain E7946	90.274	95.087	0.858
recA	Pseudomonas stutzeri DSM 10701	75.529	95.665	0.723
recA	Acinetobacter baumannii D1279779	71.884	99.711	0.717
recA	Acinetobacter baylyi ADP1	71.098	100	0.711
recA	Neisseria gonorrhoeae MS11	66.667	100	0.671
recA	Neisseria gonorrhoeae MS11	66.667	100	0.671
recA	Neisseria gonorrhoeae strain FA1090	66.667	100	0.671
recA	Glaesserella parasuis strain SC1401	67.151	99.422	0.668
recA	Ralstonia pseudosolanacearum GMI1000	70.794	91.04	0.645
recA	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	63.636	92.197	0.587
recA	Streptococcus mutans UA159	57.88	100	0.584
recA	Bacillus subtilis subsp. subtilis str. 168	62.617	92.775	0.581
recA	Riemerella anatipestifer ATCC 11845 = DSM 15868	59.819	95.665	0.572
recA	Streptococcus pneumoniae Rx1	60.991	93.353	0.569
recA	Streptococcus pneumoniae R6	60.991	93.353	0.569
recA	Streptococcus pneumoniae D39	60.991	93.353	0.569
recA	Streptococcus pneumoniae TIGR4	60.991	93.353	0.569
recA	Helicobacter pylori strain NCTC11637	60.615	93.931	0.569
recA	Helicobacter pylori 26695	60.308	93.931	0.566
recA	Streptococcus mitis NCTC 12261	60.681	93.353	0.566
recA	Streptococcus mitis SK321	60.372	93.353	0.564
recA	Latilactobacillus sakei subsp. sakei 23K	57.353	98.266	0.564
recA	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	60.436	92.775	0.561
recA	Streptococcus pyogenes NZ131	59.077	93.931	0.555
recA	Lactococcus lactis subsp. cremoris KW2	57.895	93.353	0.54