Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   AB5Y62_RS02505 Genome accession   NZ_OZ078860
Coordinates   509033..510013 (+) Length   326 a.a.
NCBI ID   WP_004735404.1    Uniprot ID   A0A7W4C9S7
Organism   Vibrio splendidus isolate A06     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 504033..515013
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB5Y62_RS02475 ispD 504286..504987 (+) 702 WP_016795283.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  AB5Y62_RS02480 ispF 504990..505469 (+) 480 WP_004735397.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  AB5Y62_RS02485 truD 505492..506538 (+) 1047 WP_016795281.1 tRNA pseudouridine(13) synthase TruD -
  AB5Y62_RS02490 surE 506615..507358 (+) 744 WP_193835910.1 5'/3'-nucleotidase SurE -
  AB5Y62_RS02495 - 507359..507985 (+) 627 WP_017084312.1 protein-L-isoaspartate(D-aspartate) O-methyltransferase -
  AB5Y62_RS02500 nlpD 508020..508934 (+) 915 WP_029222472.1 murein hydrolase activator NlpD -
  AB5Y62_RS02505 rpoS 509033..510013 (+) 981 WP_004735404.1 RNA polymerase sigma factor RpoS Regulator
  AB5Y62_RS02510 mutS 510171..512732 (-) 2562 WP_102536729.1 DNA mismatch repair protein MutS -
  AB5Y62_RS02515 pncC 512856..513350 (+) 495 WP_029406152.1 nicotinamide-nucleotide amidase -
  AB5Y62_RS02520 recA 513490..514530 (+) 1041 WP_004735435.1 recombinase RecA Machinery gene

Sequence

Protein


Download         Length: 326 a.a.        Molecular weight: 37244.51 Da        Isoelectric Point: 5.4366

>NTDB_id=1166576 AB5Y62_RS02505 WP_004735404.1 509033..510013(+) (rpoS) [Vibrio splendidus isolate A06]
MSISNAVTKEEFDLNQATTEPEALGKAKRTVKKKTEAKEEVEVTSKSLDATQLYLGEIGFSPLLTAEEEVLYARRALRGD
EAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIRL
PIHVVKELNIYLRTARELSQKLDHEPTAEEIASKLDKPVGDVSKMLRLNERVSSVDTPIGGDGEKALLDIIPDINNSDPE
VSTQDSDIKNSLIFWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREISLTRERVRQIQVEGLRRLREILIKQGLNMENL
FNVEND

Nucleotide


Download         Length: 981 bp        

>NTDB_id=1166576 AB5Y62_RS02505 WP_004735404.1 509033..510013(+) (rpoS) [Vibrio splendidus isolate A06]
ATGAGTATAAGCAATGCAGTAACCAAAGAAGAGTTCGATCTTAACCAAGCAACCACGGAACCGGAAGCTCTTGGAAAAGC
AAAACGAACAGTCAAAAAGAAAACCGAAGCGAAAGAAGAAGTTGAAGTTACGTCTAAAAGTTTAGATGCTACTCAGCTTT
ATTTAGGCGAAATCGGTTTCTCACCACTACTAACCGCTGAAGAAGAAGTGCTTTATGCACGTCGAGCTCTACGCGGTGAT
GAAGCAGCACGTAAACGCATGATCGAAAGTAACCTGCGTTTAGTGGTAAAAATTTCACGTCGTTATAGTAACCGTGGTCT
TGCACTTCTTGATCTTATTGAAGAAGGCAACCTAGGTTTGATTCGCGCCGTAGAGAAATTTGACCCAGAACGTGGTTTCC
GCTTCTCAACTTACGCGACATGGTGGATTCGTCAAACCATTGAACGTGCGTTAATGAATCAGACTCGCACTATCCGTTTG
CCAATCCATGTTGTGAAAGAGCTGAACATCTATCTGCGTACCGCAAGAGAGCTATCACAAAAACTTGATCATGAACCAAC
GGCGGAAGAAATTGCTTCTAAGCTAGATAAGCCTGTTGGTGATGTGAGTAAGATGCTTCGTCTAAACGAAAGAGTGAGCT
CTGTTGATACGCCAATTGGTGGTGACGGTGAGAAAGCACTGTTGGATATTATTCCAGACATCAACAATTCAGATCCTGAG
GTTTCAACTCAAGATAGCGATATCAAGAACTCGTTGATTTTCTGGCTTGATGAACTGAATCCTAAGCAGAAAGAGGTGCT
TGCACGTCGCTTTGGACTACTGGGTTACGAACCGTCAACACTAGAAGAAGTAGGCCGTGAAATCAGCCTGACTCGCGAAC
GTGTTCGTCAAATTCAAGTTGAAGGCCTTCGCCGTCTACGTGAGATTCTTATCAAGCAAGGTCTTAATATGGAAAATCTA
TTCAATGTAGAAAACGACTAA

Domains

Predicted by InterproScan.

Sigma-70 region 3 (Sigma70_r3)

(167-240)

Sigma-70 region 2 (Sigma70_r2)

(87-156)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(49-82)

Sigma-70, region 4 (Sigma70_r4)

(255-308)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7W4C9S7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

81.416

100

0.847

Multiple sequence alignment