Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   AB3Y92_RS08885 Genome accession   NZ_OZ061327
Coordinates   1736239..1737279 (+) Length   346 a.a.
NCBI ID   WP_058013944.1    Uniprot ID   -
Organism   Bacillus pumilus isolate Bacillus pumilus CIRM-BIA2784     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1731239..1742279
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3Y92_RS08860 - 1732023..1732280 (+) 258 WP_003211590.1 DUF3243 domain-containing protein -
  AB3Y92_RS08865 - 1732412..1733203 (+) 792 WP_003211480.1 DUF3388 domain-containing protein -
  AB3Y92_RS08870 - 1733227..1734138 (+) 912 WP_058013947.1 helix-turn-helix domain-containing protein -
  AB3Y92_RS08875 pgsA 1734214..1734795 (+) 582 WP_058013946.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  AB3Y92_RS08880 cinA 1734812..1736062 (+) 1251 WP_058013945.1 competence/damage-inducible protein A Machinery gene
  AB3Y92_RS08885 recA 1736239..1737279 (+) 1041 WP_058013944.1 recombinase RecA Machinery gene
  AB3Y92_RS08890 rny 1737780..1739342 (+) 1563 WP_003211958.1 ribonuclease Y -
  AB3Y92_RS08895 - 1739431..1740225 (+) 795 WP_058013943.1 TIGR00282 family metallophosphoesterase -
  AB3Y92_RS08900 spoVS 1740427..1740687 (+) 261 WP_003211281.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 346 a.a.        Molecular weight: 37716.93 Da        Isoelectric Point: 4.7773

>NTDB_id=1165909 AB3Y92_RS08885 WP_058013944.1 1736239..1737279(+) (recA) [Bacillus pumilus isolate Bacillus pumilus CIRM-BIA2784]
MSDRQAALDMALKQIEKQFGKGSIMKLGEQTDTRISTVPSGSLALDTALGIGGYPRGRIIEVYGPESSGKTTVALHAIAE
VQQQGGQAAFIDAEHALDPVYAQKLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDIVVIDSVAALVPKAEIEGDMGDS
HVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGNDIMGNKT
RIKVVKNKVAPPFRIAEVDIMYGEGISKEGEIIDLGSELDIVQKSGAWYSYQEERLGQGRENAKQFLKENKDILLMIQEQ
IREHYGLDTNGVKVAEEEEGQEELEI

Nucleotide


Download         Length: 1041 bp        

>NTDB_id=1165909 AB3Y92_RS08885 WP_058013944.1 1736239..1737279(+) (recA) [Bacillus pumilus isolate Bacillus pumilus CIRM-BIA2784]
ATGAGTGATCGTCAAGCAGCCTTAGATATGGCTCTTAAACAAATAGAAAAGCAGTTTGGTAAAGGCTCTATTATGAAACT
AGGAGAGCAAACAGATACACGTATTTCAACAGTACCGAGTGGTTCGTTAGCACTTGATACTGCACTAGGAATAGGTGGAT
ATCCTCGCGGTCGTATTATTGAAGTATATGGTCCAGAGAGTTCTGGTAAAACGACAGTAGCACTTCATGCCATTGCTGAG
GTTCAGCAGCAGGGAGGACAAGCTGCATTTATCGATGCAGAGCATGCGCTCGATCCAGTTTACGCTCAAAAACTAGGTGT
CAATATTGATGAGCTGTTACTTTCTCAGCCTGATACAGGAGAACAAGCACTTGAAATTGCAGAAGCTCTTGTCCGTAGTG
GTGCAGTTGATATTGTTGTTATTGACTCAGTAGCTGCTCTTGTACCAAAAGCAGAGATTGAAGGAGACATGGGTGATTCA
CACGTTGGTCTACAAGCACGCTTGATGTCCCAAGCACTTCGTAAACTATCTGGTGCCATTAATAAATCAAAAACCATTGC
CATCTTTATTAACCAAATTCGTGAAAAAGTTGGGGTCATGTTCGGTAACCCTGAAACAACGCCAGGTGGACGTGCGCTGA
AGTTCTATTCATCTGTTCGTTTAGAAGTGCGCCGTGCTGAACAGCTGAAGCAGGGCAATGACATTATGGGGAATAAAACG
AGAATTAAAGTAGTGAAAAACAAAGTAGCACCGCCATTCCGTATTGCAGAAGTAGACATTATGTACGGTGAAGGAATCTC
AAAAGAGGGCGAAATCATCGACCTTGGAAGCGAACTAGATATCGTACAAAAGAGCGGTGCTTGGTATTCTTACCAAGAGG
AACGTCTTGGACAAGGCCGTGAAAATGCGAAACAGTTCCTTAAAGAAAACAAAGATATTCTTCTCATGATTCAAGAACAA
ATTAGAGAGCACTACGGTTTGGATACAAACGGAGTGAAAGTAGCTGAAGAAGAAGAAGGTCAAGAGGAATTGGAAATTTA
A

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

96.687

95.954

0.928
  recA Latilactobacillus sakei subsp. sakei 23K

75.077

93.931

0.705
  recA Streptococcus mitis NCTC 12261

68.142

97.977

0.668
  recA Streptococcus pneumoniae D39

67.742

98.555

0.668
  recA Streptococcus pneumoniae Rx1

67.742

98.555

0.668
  recA Streptococcus pneumoniae R6

67.742

98.555

0.668
  recA Streptococcus pneumoniae TIGR4

67.742

98.555

0.668
  recA Streptococcus mitis SK321

68.788

95.376

0.656
  recA Streptococcus mutans UA159

68.693

95.087

0.653
  recA Streptococcus pyogenes NZ131

67.988

94.798

0.645
  recA Lactococcus lactis subsp. cremoris KW2

66.364

95.376

0.633
  recA Neisseria gonorrhoeae MS11

63.372

99.422

0.63
  recA Neisseria gonorrhoeae MS11

63.372

99.422

0.63
  recA Neisseria gonorrhoeae strain FA1090

63.372

99.422

0.63
  recA Ralstonia pseudosolanacearum GMI1000

65.337

94.22

0.616
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.17

98.555

0.613
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.047

99.422

0.607
  recA Vibrio cholerae strain A1552

61.047

99.422

0.607
  recA Acinetobacter baumannii D1279779

61.947

97.977

0.607
  recA Helicobacter pylori 26695

64.615

93.931

0.607
  recA Helicobacter pylori strain NCTC11637

64.615

93.931

0.607
  recA Acinetobacter baylyi ADP1

60.465

99.422

0.601
  recA Glaesserella parasuis strain SC1401

60.641

99.133

0.601
  recA Pseudomonas stutzeri DSM 10701

60.947

97.688

0.595
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.385

94.509

0.59
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.062

93.353

0.561

Multiple sequence alignment