Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   AB3Y92_RS08880 Genome accession   NZ_OZ061327
Coordinates   1734812..1736062 (+) Length   416 a.a.
NCBI ID   WP_058013945.1    Uniprot ID   -
Organism   Bacillus pumilus isolate Bacillus pumilus CIRM-BIA2784     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1729812..1741062
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3Y92_RS08855 - 1731221..1731949 (+) 729 WP_058013948.1 elongation factor P 5-aminopentanone reductase -
  AB3Y92_RS08860 - 1732023..1732280 (+) 258 WP_003211590.1 DUF3243 domain-containing protein -
  AB3Y92_RS08865 - 1732412..1733203 (+) 792 WP_003211480.1 DUF3388 domain-containing protein -
  AB3Y92_RS08870 - 1733227..1734138 (+) 912 WP_058013947.1 helix-turn-helix domain-containing protein -
  AB3Y92_RS08875 pgsA 1734214..1734795 (+) 582 WP_058013946.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  AB3Y92_RS08880 cinA 1734812..1736062 (+) 1251 WP_058013945.1 competence/damage-inducible protein A Machinery gene
  AB3Y92_RS08885 recA 1736239..1737279 (+) 1041 WP_058013944.1 recombinase RecA Machinery gene
  AB3Y92_RS08890 rny 1737780..1739342 (+) 1563 WP_003211958.1 ribonuclease Y -
  AB3Y92_RS08895 - 1739431..1740225 (+) 795 WP_058013943.1 TIGR00282 family metallophosphoesterase -
  AB3Y92_RS08900 spoVS 1740427..1740687 (+) 261 WP_003211281.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45573.70 Da        Isoelectric Point: 5.0622

>NTDB_id=1165908 AB3Y92_RS08880 WP_058013945.1 1734812..1736062(+) (cinA) [Bacillus pumilus isolate Bacillus pumilus CIRM-BIA2784]
MKSERKAEIIAVGSELLLGQITNTNAQFISKQLAEIGVNVYYHTAVGDNPERLKSAIQVAQERSNFIIFSGGLGPTKDDL
TKETIASTLGKELVLNEEAFESIQEYFRKTGRDMSPNNRKQALVLEGSDVLVNRFGMAPGMFIQENDTFYMLLPGPPSEL
HPMFENEAKPLISEKLGLKEKIVSVVLRFFGIGESQLETDLEDLIDAQTNPTIAPLASDGEVTLRLTAKHEDEKETERLL
KETEAKILARVGEYFYGYGDTSLVREASKALHEHGKTVAAAESLTGGMFSEWLTDLEGASSILSGSIVCYTNKVKQQVLG
CREETLSSHGAVSKECALELAEGARKLTGSDIGISFTGVAGPDTHEGQPVGKVFIGLSTKDHTDVFEWMFTGSRSGIRKR
AVKYGLHHLLNLLKES

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=1165908 AB3Y92_RS08880 WP_058013945.1 1734812..1736062(+) (cinA) [Bacillus pumilus isolate Bacillus pumilus CIRM-BIA2784]
TTGAAGTCAGAGAGAAAAGCAGAAATTATTGCAGTCGGTTCCGAACTTTTGCTAGGGCAAATTACGAATACGAATGCACA
ATTCATCAGCAAACAGCTAGCTGAAATTGGTGTGAATGTTTATTACCATACAGCAGTTGGTGACAATCCAGAGCGTTTAA
AAAGCGCCATTCAAGTGGCGCAGGAAAGATCGAATTTTATTATCTTCTCAGGTGGTCTTGGACCAACGAAAGATGATTTA
ACAAAAGAAACCATTGCGAGTACGCTCGGAAAAGAGCTCGTGCTAAATGAAGAAGCGTTTGAATCCATTCAAGAATACTT
TCGAAAGACTGGACGAGACATGTCACCGAATAACCGGAAGCAGGCGCTCGTTCTAGAAGGTTCTGATGTGCTTGTGAACC
GGTTTGGGATGGCCCCAGGTATGTTTATTCAAGAAAACGATACGTTTTATATGCTGCTTCCTGGCCCGCCAAGTGAACTG
CATCCGATGTTTGAGAACGAGGCGAAACCGCTGATATCTGAGAAACTGGGTTTAAAGGAAAAAATCGTGTCTGTTGTTCT
TCGCTTCTTCGGAATCGGTGAATCACAGCTTGAAACAGACCTAGAAGATTTAATTGATGCTCAAACAAACCCAACGATTG
CACCTCTTGCATCTGACGGTGAAGTAACACTTAGGCTCACGGCCAAGCATGAGGATGAAAAAGAAACGGAGCGTCTGTTA
AAAGAAACAGAAGCGAAAATTTTAGCACGGGTAGGAGAGTACTTCTACGGTTATGGTGATACCTCACTTGTCCGTGAAGC
TTCAAAGGCCTTGCACGAACACGGGAAAACAGTGGCAGCGGCTGAGAGCCTGACAGGCGGAATGTTTTCTGAATGGCTGA
CAGATCTTGAAGGTGCATCGTCGATTTTAAGCGGCAGTATCGTTTGTTATACAAACAAAGTCAAACAGCAGGTGCTTGGC
TGCCGGGAAGAAACATTGTCTTCTCATGGTGCTGTCAGCAAAGAGTGTGCTTTAGAGCTTGCTGAAGGTGCTAGAAAGCT
TACGGGAAGTGATATTGGCATTAGCTTTACGGGTGTAGCAGGCCCTGATACCCACGAGGGACAGCCTGTCGGGAAAGTGT
TCATCGGGCTATCTACGAAAGACCATACTGACGTGTTTGAATGGATGTTTACAGGAAGCCGGTCGGGCATTCGCAAGCGC
GCTGTGAAATACGGTCTGCATCACTTGCTCAATTTATTAAAAGAAAGTTAA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(9-172)

Damage-inducible protein CinA KH domain (CinA_KH)

(186-257)

Competence-damaged protein (CinA)

(262-412)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

74.217

99.76

0.74
  cinA Streptococcus mutans UA159

48.558

100

0.486
  cinA Streptococcus mitis SK321

47.981

100

0.486
  cinA Streptococcus mitis NCTC 12261

47.743

100

0.483
  cinA Streptococcus pneumoniae TIGR4

47.743

100

0.483
  cinA Streptococcus pneumoniae Rx1

47.506

100

0.481
  cinA Streptococcus pneumoniae R6

47.506

100

0.481
  cinA Streptococcus pneumoniae D39

47.268

100

0.478
  cinA Streptococcus suis isolate S10

43.651

90.865

0.397

Multiple sequence alignment