Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   AB3234_RS07850 Genome accession   NZ_OZ061257
Coordinates   1686697..1687857 (-) Length   386 a.a.
NCBI ID   WP_225419784.1    Uniprot ID   -
Organism   Levilactobacillus cerevisiae isolate Levilactobacillus cerevisiae CIRM-BIA2671     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1681697..1692857
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3234_RS07840 - 1683339..1684133 (-) 795 WP_125581258.1 TIGR00282 family metallophosphoesterase -
  AB3234_RS07845 rny 1684848..1686407 (-) 1560 WP_367377083.1 ribonuclease Y -
  AB3234_RS07850 recA 1686697..1687857 (-) 1161 WP_225419784.1 recombinase RecA Machinery gene
  AB3234_RS07855 cinA 1687948..1689198 (-) 1251 WP_125581262.1 competence/damage-inducible protein A Machinery gene
  AB3234_RS07860 pgsA 1689543..1690130 (-) 588 WP_125581264.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  AB3234_RS07865 - 1690202..1691146 (-) 945 WP_125581266.1 helix-turn-helix domain-containing protein -
  AB3234_RS07870 - 1691259..1692545 (-) 1287 WP_164511523.1 EF-P 5-aminopentanol modification-associated protein YfmH -

Sequence

Protein


Download         Length: 386 a.a.        Molecular weight: 41307.82 Da        Isoelectric Point: 6.7608

>NTDB_id=1165672 AB3234_RS07850 WP_225419784.1 1686697..1687857(-) (recA) [Levilactobacillus cerevisiae isolate Levilactobacillus cerevisiae CIRM-BIA2671]
MADERQAALDKALKKIEKDFGKGSIMRLGDNSNLDIETVPSGSLALDVALGVGGYPRGRIVEIYGPESSGKTTVALHAVA
EVQKRGGTAAYIDAENALDPAYATSLGVNIDQLLLSQPDTGEQGLQIADALISSGAVDIVVVDSVAALVPRAEIEGEMGD
AHVGLQARLMSQALRKLSGTINKTKTIALFINQIREKVGVMFGNPEVTPGGRALKFYATVRLEVRRAEQIKDGTDVIGNR
TRIKVVKNKVAPPFKRAEVDIMYGKGISQTGELIDMAVEKDIVDKSGSWYSYGEDRIGQGRENAKNYLSDHPDTMAEINQ
RVRAAYGVGEGDEADAATAKKTAASKDKETKTDKKETKATATPQKAKAKPEQSELIPDKDATKPGK

Nucleotide


Download         Length: 1161 bp        

>NTDB_id=1165672 AB3234_RS07850 WP_225419784.1 1686697..1687857(-) (recA) [Levilactobacillus cerevisiae isolate Levilactobacillus cerevisiae CIRM-BIA2671]
ATGGCTGACGAACGACAAGCAGCGTTAGACAAAGCGCTGAAGAAAATTGAAAAAGATTTTGGTAAAGGCTCGATCATGCG
GCTAGGTGACAACAGTAACCTGGACATTGAAACCGTACCATCTGGATCGTTGGCCCTTGATGTGGCCTTGGGTGTTGGTG
GTTACCCCCGTGGACGAATCGTAGAAATCTACGGACCAGAATCATCTGGGAAGACGACCGTGGCGTTACATGCCGTAGCG
GAAGTTCAAAAGCGGGGCGGAACCGCAGCCTATATTGATGCGGAAAACGCCTTGGATCCGGCTTACGCGACATCTTTAGG
GGTTAACATTGACCAATTGCTATTGTCACAACCTGATACCGGTGAACAAGGATTGCAAATTGCGGATGCCTTGATCTCCA
GTGGGGCCGTGGACATTGTGGTTGTCGACTCCGTTGCCGCACTGGTTCCCCGTGCCGAAATTGAAGGGGAAATGGGGGAC
GCTCACGTGGGGTTACAAGCCCGCCTGATGTCCCAAGCTCTCCGGAAATTATCTGGAACGATTAATAAGACGAAAACAAT
TGCACTTTTCATTAATCAAATTCGTGAAAAAGTTGGGGTTATGTTTGGTAACCCTGAAGTGACTCCTGGTGGTCGGGCTT
TGAAGTTTTACGCGACGGTTCGTTTGGAAGTTCGTCGGGCAGAACAAATCAAGGACGGAACCGATGTCATTGGTAACCGC
ACACGAATTAAGGTCGTCAAGAACAAGGTTGCGCCGCCATTCAAGCGGGCCGAAGTTGATATCATGTACGGTAAGGGGAT
TTCCCAAACCGGTGAATTAATCGACATGGCCGTTGAAAAGGATATCGTGGACAAGAGTGGTTCTTGGTACTCTTACGGTG
AGGACCGAATTGGTCAAGGCCGTGAGAACGCAAAGAATTACCTGTCGGACCACCCTGATACAATGGCTGAAATTAACCAA
CGGGTCCGGGCCGCTTACGGTGTCGGCGAGGGTGATGAGGCCGATGCAGCGACCGCCAAGAAGACGGCAGCTAGCAAGGA
TAAAGAAACCAAGACCGACAAAAAAGAGACTAAGGCTACTGCGACGCCACAAAAGGCGAAAGCTAAGCCAGAGCAAAGTG
AATTAATTCCAGACAAGGATGCAACCAAGCCTGGGAAGTAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

84.32

87.565

0.738
  recA Bacillus subtilis subsp. subtilis str. 168

76.22

84.974

0.648
  recA Streptococcus mitis NCTC 12261

68.391

90.155

0.617
  recA Streptococcus mutans UA159

66.017

93.005

0.614
  recA Streptococcus mitis SK321

70.149

86.788

0.609
  recA Streptococcus pyogenes NZ131

70.393

85.751

0.604
  recA Streptococcus pneumoniae Rx1

69.76

86.528

0.604
  recA Streptococcus pneumoniae D39

69.76

86.528

0.604
  recA Streptococcus pneumoniae R6

69.76

86.528

0.604
  recA Streptococcus pneumoniae TIGR4

69.76

86.528

0.604
  recA Lactococcus lactis subsp. cremoris KW2

70.517

85.233

0.601
  recA Neisseria gonorrhoeae MS11

60.641

88.86

0.539
  recA Neisseria gonorrhoeae strain FA1090

60.641

88.86

0.539
  recA Neisseria gonorrhoeae MS11

60.641

88.86

0.539
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.702

85.233

0.526
  recA Vibrio cholerae strain A1552

62.539

83.679

0.523
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.539

83.679

0.523
  recA Ralstonia pseudosolanacearum GMI1000

64.537

81.088

0.523
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.162

84.715

0.518
  recA Acinetobacter baylyi ADP1

61.3

83.679

0.513
  recA Pseudomonas stutzeri DSM 10701

60.802

83.938

0.51
  recA Acinetobacter baumannii D1279779

60.372

83.679

0.505
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.967

85.233

0.503
  recA Glaesserella parasuis strain SC1401

60.436

83.161

0.503
  recA Helicobacter pylori 26695

57.447

85.233

0.49
  recA Helicobacter pylori strain NCTC11637

57.447

85.233

0.49

Multiple sequence alignment