Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   AB3234_RS07855 Genome accession   NZ_OZ061257
Coordinates   1687948..1689198 (-) Length   416 a.a.
NCBI ID   WP_125581262.1    Uniprot ID   -
Organism   Levilactobacillus cerevisiae isolate Levilactobacillus cerevisiae CIRM-BIA2671     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1682948..1694198
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3234_RS07840 - 1683339..1684133 (-) 795 WP_125581258.1 TIGR00282 family metallophosphoesterase -
  AB3234_RS07845 rny 1684848..1686407 (-) 1560 WP_367377083.1 ribonuclease Y -
  AB3234_RS07850 recA 1686697..1687857 (-) 1161 WP_225419784.1 recombinase RecA Machinery gene
  AB3234_RS07855 cinA 1687948..1689198 (-) 1251 WP_125581262.1 competence/damage-inducible protein A Machinery gene
  AB3234_RS07860 pgsA 1689543..1690130 (-) 588 WP_125581264.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  AB3234_RS07865 - 1690202..1691146 (-) 945 WP_125581266.1 helix-turn-helix domain-containing protein -
  AB3234_RS07870 - 1691259..1692545 (-) 1287 WP_164511523.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  AB3234_RS07875 - 1692538..1693818 (-) 1281 WP_125581270.1 EF-P 5-aminopentanol modification-associated protein YfmF -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 44563.78 Da        Isoelectric Point: 5.1306

>NTDB_id=1165673 AB3234_RS07855 WP_125581262.1 1687948..1689198(-) (cinA) [Levilactobacillus cerevisiae isolate Levilactobacillus cerevisiae CIRM-BIA2671]
MQAEIIAVGTEILLGQIVDTNSAFIARELAEAGIEVYYHSLVGDNADRLTAVVNQARSRSDLVIISGGLGPTKDDLTKQT
VAHLLGVKLIEDAPAMVKIRCHFATADRPMTPNNRLQALYPEGSQPLKNRTGMAVGAFYQDPNAADIMLLPGPPSETEPM
FVEQAVPLLKATYNRDEYLVSRVLRFFGIGEGQLVTVLSDLIDGQSNPTIAPYAKVNEVTLRLTAQAQDEAAGTKLLDQM
TATIKGRVGEYLYGYGDENSLAAVVVNDMIARGLTITGAESLTAGKFQSTLGDVPGVSAIFPGGFVTYANSAKHDLLGIP
QEIIDRDGVVSAATAQQMAERSRALLDTDFSLSFTGVAGPDALEGHPAGTVWLGLAQRGHEPRARLVHLTGTRAAIRERS
VMTGLDWLRRVLNGLK

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=1165673 AB3234_RS07855 WP_125581262.1 1687948..1689198(-) (cinA) [Levilactobacillus cerevisiae isolate Levilactobacillus cerevisiae CIRM-BIA2671]
ATGCAAGCGGAAATTATTGCCGTCGGAACTGAAATTTTATTGGGACAGATTGTCGATACCAACTCGGCCTTCATTGCCCG
TGAATTGGCCGAAGCCGGCATTGAGGTCTATTACCATTCACTGGTGGGCGACAACGCTGATCGACTGACTGCGGTGGTGA
ATCAGGCCCGTTCTCGTAGCGATTTGGTGATTATTAGTGGCGGCTTAGGACCGACCAAGGATGATTTGACCAAGCAGACG
GTGGCGCATTTGCTGGGCGTTAAGCTGATTGAAGACGCGCCAGCAATGGTGAAGATTCGCTGCCACTTTGCAACTGCCGA
CCGGCCCATGACGCCTAACAACCGGTTACAGGCGCTTTACCCTGAAGGGAGCCAACCACTCAAGAATCGGACTGGCATGG
CTGTGGGCGCCTTTTATCAGGATCCTAACGCGGCTGACATCATGTTACTCCCTGGACCACCCAGTGAGACGGAGCCGATG
TTTGTTGAACAGGCGGTCCCGTTGCTGAAGGCCACCTACAATCGTGACGAATATTTGGTGTCGCGGGTGCTGCGCTTCTT
TGGTATTGGTGAGGGGCAACTAGTCACGGTCTTAAGCGACCTGATCGATGGGCAGAGTAACCCGACGATTGCGCCTTACG
CCAAGGTCAACGAGGTGACGCTGCGACTGACGGCTCAAGCACAGGATGAAGCAGCGGGCACCAAACTTCTCGACCAGATG
ACCGCGACCATTAAGGGCCGGGTCGGGGAGTACCTTTACGGCTATGGGGATGAGAACAGTTTGGCCGCCGTGGTGGTCAA
CGACATGATTGCCCGGGGCCTGACCATTACCGGTGCTGAGAGTCTGACGGCCGGCAAATTTCAGAGCACGCTTGGTGATG
TCCCGGGTGTCTCCGCGATTTTTCCTGGGGGCTTCGTGACGTATGCCAACTCGGCGAAACATGACCTCTTGGGCATCCCA
CAGGAAATCATTGACCGGGATGGTGTGGTTAGTGCGGCCACGGCACAGCAAATGGCGGAGCGGTCCCGGGCTCTATTGGA
TACAGACTTTTCACTGAGCTTTACCGGTGTGGCCGGTCCGGATGCGTTGGAAGGCCATCCGGCAGGGACCGTCTGGCTGG
GCTTGGCGCAACGAGGCCACGAACCACGGGCCCGGCTGGTTCACCTGACGGGGACGCGCGCGGCCATTCGTGAACGGTCG
GTGATGACCGGATTAGACTGGTTACGGCGTGTTCTGAACGGATTGAAATAA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(5-170)

Competence-damaged protein (CinA)

(259-412)

Damage-inducible protein CinA KH domain (CinA_KH)

(181-254)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis SK321

50.594

100

0.512
  cinA Streptococcus mitis NCTC 12261

50.356

100

0.51
  cinA Streptococcus pneumoniae TIGR4

49.526

100

0.502
  cinA Streptococcus pneumoniae Rx1

49.526

100

0.502
  cinA Streptococcus pneumoniae R6

49.526

100

0.502
  cinA Streptococcus pneumoniae D39

49.289

100

0.5
  cinA Streptococcus mutans UA159

49.157

99.76

0.49
  cinA Bacillus subtilis subsp. subtilis str. 168

48.418

98.798

0.478
  cinA Streptococcus suis isolate S10

39.423

100

0.394

Multiple sequence alignment