Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ACI6PE_RS08410 Genome accession   NZ_OY725319
Coordinates   1775679..1776851 (-) Length   390 a.a.
NCBI ID   WP_057733299.1    Uniprot ID   -
Organism   Levilactobacillus zymae strain LMG 22198     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1770679..1781851
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACI6PE_RS08400 (LZ22198_MCBDPFMK_01676) - 1772912..1773709 (-) 798 WP_057733304.1 TIGR00282 family metallophosphoesterase -
  ACI6PE_RS08405 (LZ22198_MCBDPFMK_01677) rny 1773838..1775397 (-) 1560 WP_057733302.1 ribonuclease Y -
  ACI6PE_RS08410 (LZ22198_MCBDPFMK_01678) recA 1775679..1776851 (-) 1173 WP_057733299.1 recombinase RecA Machinery gene
  ACI6PE_RS08415 (LZ22198_MCBDPFMK_01679) cinA 1776944..1778194 (-) 1251 WP_057733297.1 competence/damage-inducible protein A Machinery gene
  ACI6PE_RS08420 (LZ22198_MCBDPFMK_01680) pgsA 1778314..1778901 (-) 588 WP_057733295.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ACI6PE_RS08425 (LZ22198_MCBDPFMK_01681) - 1778974..1779918 (-) 945 WP_057733293.1 RodZ domain-containing protein -
  ACI6PE_RS08430 (LZ22198_MCBDPFMK_01682) yfmH 1780011..1781318 (-) 1308 WP_087742222.1 EF-P 5-aminopentanol modification-associated protein YfmH -

Sequence

Protein


Download         Length: 390 a.a.        Molecular weight: 41596.18 Da        Isoelectric Point: 6.7755

>NTDB_id=1160615 ACI6PE_RS08410 WP_057733299.1 1775679..1776851(-) (recA) [Levilactobacillus zymae strain LMG 22198]
MADERQAALDKALKKIEKDFGKGSIMRMGDDTKMQILTVPSGSLALDVALGVGGYPRGRIVEIYGPESSGKTTVALHAVA
EVQKRGGTAAYIDAENALDPAYATALGVDIDNLLLSQPDTGEQGLQITDALVSSGAVDIVVVDSVAALVPRAEIEGEMGD
AHVGLQARLMSQALRKLSGTINKTKTIALFINQIREKVGVMFGNPEVTPGGRALKFYSTIRLEVRRAEQIKNGTDVIGNR
TRIKVVKNKVAPPFKKAEVDIMYGHGISQTGELLDMAVEKDIVDKSGSWYSYGEDRIGQGRENAKQYLADHPDMMAEVNQ
RVRAAYGVADEDAATTDTKDTKADKTKDGAKADTKATPKDAATKPAPKVDTTPGTPGNSGATVIQPNHHK

Nucleotide


Download         Length: 1173 bp        

>NTDB_id=1160615 ACI6PE_RS08410 WP_057733299.1 1775679..1776851(-) (recA) [Levilactobacillus zymae strain LMG 22198]
ATGGCTGACGAACGACAAGCAGCGTTAGACAAAGCGCTGAAGAAGATCGAAAAGGACTTCGGTAAGGGGTCCATCATGCG
GATGGGCGACGATACCAAGATGCAAATCTTGACCGTCCCATCTGGCTCGTTGGCTTTAGACGTAGCCTTAGGAGTCGGCG
GTTACCCGCGGGGACGGATTGTAGAAATCTACGGTCCCGAATCGTCTGGGAAAACCACGGTGGCCTTACACGCGGTTGCC
GAAGTGCAAAAGCGTGGGGGCACGGCGGCTTACATTGATGCCGAAAACGCCCTCGATCCCGCCTATGCGACGGCTTTAGG
TGTCGATATCGACAACTTACTGTTATCCCAACCAGATACCGGGGAACAGGGACTCCAAATCACGGATGCCCTGGTGTCCT
CCGGAGCCGTGGATATCGTGGTCGTCGATTCGGTGGCGGCCTTAGTACCACGGGCCGAAATTGAAGGCGAAATGGGTGAC
GCCCACGTGGGGTTGCAGGCCCGGTTAATGTCACAAGCGCTCCGGAAGTTATCGGGGACCATTAACAAGACCAAGACCAT
TGCGTTGTTCATTAACCAAATTCGGGAAAAAGTCGGCGTGATGTTCGGGAACCCCGAAGTAACGCCCGGTGGCCGGGCCT
TGAAGTTCTACTCGACGATTCGTTTGGAAGTTCGTCGGGCCGAACAGATCAAGAACGGGACGGACGTCATTGGGAACCGG
ACCCGAATCAAGGTCGTGAAGAACAAGGTTGCGCCGCCGTTTAAGAAGGCCGAAGTGGACATCATGTACGGTCACGGGAT
TTCCCAAACGGGTGAACTGCTCGACATGGCGGTGGAAAAAGACATCGTGGATAAGAGTGGCTCATGGTACTCGTACGGTG
AAGACCGGATCGGCCAAGGCCGGGAGAACGCCAAGCAATACCTAGCGGATCATCCGGACATGATGGCGGAAGTCAATCAA
CGGGTGCGGGCCGCGTATGGGGTAGCCGATGAGGACGCTGCTACGACCGACACGAAGGATACTAAGGCGGATAAGACCAA
GGACGGCGCTAAAGCCGATACCAAGGCAACGCCTAAGGATGCCGCGACGAAGCCGGCGCCCAAGGTGGATACCACGCCCG
GGACGCCCGGTAATTCCGGCGCCACGGTGATTCAACCCAATCATCATAAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

86.095

86.667

0.746
  recA Bacillus subtilis subsp. subtilis str. 168

75.61

84.103

0.636
  recA Streptococcus mutans UA159

65.546

91.538

0.6
  recA Streptococcus pneumoniae R6

66.477

90.256

0.6
  recA Streptococcus pneumoniae TIGR4

66.477

90.256

0.6
  recA Streptococcus pneumoniae Rx1

66.477

90.256

0.6
  recA Streptococcus pneumoniae D39

66.477

90.256

0.6
  recA Streptococcus mitis SK321

67.733

88.205

0.597
  recA Streptococcus mitis NCTC 12261

67.151

88.205

0.592
  recA Streptococcus pyogenes NZ131

68.882

84.872

0.585
  recA Lactococcus lactis subsp. cremoris KW2

68.072

85.128

0.579
  recA Neisseria gonorrhoeae MS11

61.702

84.359

0.521
  recA Neisseria gonorrhoeae MS11

61.702

84.359

0.521
  recA Neisseria gonorrhoeae strain FA1090

61.702

84.359

0.521
  recA Ralstonia pseudosolanacearum GMI1000

62.813

82.051

0.515
  recA Acinetobacter baylyi ADP1

57.895

87.692

0.508
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.923

83.333

0.508
  recA Pseudomonas stutzeri DSM 10701

57.558

88.205

0.508
  recA Vibrio cholerae O1 biovar El Tor strain E7946

60.372

82.821

0.5
  recA Vibrio cholerae strain A1552

60.372

82.821

0.5
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.327

83.846

0.497
  recA Acinetobacter baumannii D1279779

59.133

82.821

0.49
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

57.447

84.359

0.485
  recA Glaesserella parasuis strain SC1401

58.567

82.308

0.482
  recA Helicobacter pylori 26695

56.364

84.615

0.477
  recA Helicobacter pylori strain NCTC11637

56.364

84.615

0.477

Multiple sequence alignment