Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   ACI6PE_RS08415 Genome accession   NZ_OY725319
Coordinates   1776944..1778194 (-) Length   416 a.a.
NCBI ID   WP_057733297.1    Uniprot ID   -
Organism   Levilactobacillus zymae strain LMG 22198     
Function   require for competence (predicted from homology)   
Unclear

Genomic Context

Location: 1771944..1783194
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACI6PE_RS08400 (LZ22198_MCBDPFMK_01676) - 1772912..1773709 (-) 798 WP_057733304.1 TIGR00282 family metallophosphoesterase -
  ACI6PE_RS08405 (LZ22198_MCBDPFMK_01677) rny 1773838..1775397 (-) 1560 WP_057733302.1 ribonuclease Y -
  ACI6PE_RS08410 (LZ22198_MCBDPFMK_01678) recA 1775679..1776851 (-) 1173 WP_057733299.1 recombinase RecA Machinery gene
  ACI6PE_RS08415 (LZ22198_MCBDPFMK_01679) cinA 1776944..1778194 (-) 1251 WP_057733297.1 competence/damage-inducible protein A Machinery gene
  ACI6PE_RS08420 (LZ22198_MCBDPFMK_01680) pgsA 1778314..1778901 (-) 588 WP_057733295.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ACI6PE_RS08425 (LZ22198_MCBDPFMK_01681) - 1778974..1779918 (-) 945 WP_057733293.1 RodZ domain-containing protein -
  ACI6PE_RS08430 (LZ22198_MCBDPFMK_01682) yfmH 1780011..1781318 (-) 1308 WP_087742222.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  ACI6PE_RS08435 (LZ22198_MCBDPFMK_01683) yfmF 1781318..1782589 (-) 1272 WP_057733291.1 EF-P 5-aminopentanol modification-associated protein YfmF -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 44719.73 Da        Isoelectric Point: 5.2265

>NTDB_id=1160616 ACI6PE_RS08415 WP_057733297.1 1776944..1778194(-) (cinA) [Levilactobacillus zymae strain LMG 22198]
MQAEIIAVGTEILLGQVVDTNSAFIAQELASAGIEVYYHSLVGDNADRLTAVLEQARSRSDLVVISGGLGPTKDDLTKQT
VAQLLGVKLVEDAAAMTKIQAHFATTDRPLTPNNRLQALYLAGSQPLKNLTGMAVGAFYQDPHGADMMLLPGPPSELEPM
FIHEALPALKHAYERHEYLTSRVLRFFGIGESQLVTQLSDLIDGQTNPTIAPYAKRNEVTLRLTAQTTETASAEALLDQM
TATIQERVGDYLYGYGDDNSLANVVVHQLIAQHLTITGAESLTAGEFQSTIGSVPGVSAVFPGGFVTYANRAKHQLLGIP
QHIIDTQGVVSEATAKEMAERARQLLDTDLALSFTGAAGPDSLEGHPAGTVWLGLAQRGQAPQAKLMHFAGTRSDVRMRS
VLSGLDWLRRTLPTEK

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=1160616 ACI6PE_RS08415 WP_057733297.1 1776944..1778194(-) (cinA) [Levilactobacillus zymae strain LMG 22198]
ATGCAAGCGGAAATTATTGCAGTGGGAACGGAAATTTTACTAGGACAAGTCGTCGATACAAATTCGGCCTTTATCGCCCA
GGAGCTCGCGAGTGCGGGCATTGAGGTGTACTACCATTCGCTAGTGGGCGACAATGCCGACCGACTAACGGCCGTGCTGG
AACAGGCACGGTCGCGCAGTGATCTGGTGGTGATCAGCGGTGGGCTGGGACCGACCAAGGACGATTTGACCAAGCAGACG
GTCGCCCAACTCCTAGGCGTCAAGCTGGTCGAAGACGCGGCGGCTATGACCAAGATTCAGGCCCACTTTGCCACGACGGA
CCGGCCGTTGACGCCCAATAACCGGCTCCAGGCGTTGTATTTGGCCGGGAGCCAACCCTTAAAGAACCTGACGGGGATGG
CGGTAGGAGCCTTCTATCAAGACCCCCACGGCGCGGATATGATGTTATTACCCGGGCCGCCGAGTGAACTAGAACCAATG
TTTATTCACGAAGCGTTACCGGCCCTAAAGCACGCCTACGAACGGCACGAATACTTGACGTCACGCGTGTTACGATTCTT
TGGCATCGGGGAGAGTCAACTGGTGACCCAGCTGAGTGACCTGATCGATGGGCAGACCAACCCGACGATTGCTCCGTACG
CTAAACGCAATGAGGTGACCCTGCGGTTAACGGCCCAGACTACGGAAACGGCGTCGGCGGAAGCGTTATTGGACCAAATG
ACGGCCACCATCCAGGAACGTGTCGGCGACTACCTCTACGGGTACGGTGACGATAATAGCCTAGCCAACGTGGTGGTCCA
CCAGTTGATTGCGCAGCACCTGACGATTACGGGGGCTGAGAGTTTAACGGCCGGTGAGTTTCAGAGTACGATTGGGAGCG
TGCCGGGGGTCTCGGCCGTCTTTCCGGGGGGATTCGTGACGTACGCCAATCGCGCCAAACACCAATTACTCGGGATTCCG
CAACACATCATCGATACCCAGGGCGTGGTCAGTGAGGCCACGGCCAAGGAAATGGCCGAACGCGCCCGGCAATTGCTGGA
TACCGATTTGGCGTTGAGCTTTACGGGAGCGGCCGGGCCGGATAGCCTGGAAGGCCACCCCGCCGGGACCGTGTGGCTAG
GCTTAGCCCAACGGGGACAAGCGCCCCAGGCGAAGTTGATGCACTTTGCGGGCACCCGCAGCGACGTGCGCATGCGGTCC
GTTTTGAGTGGTTTGGATTGGCTACGGCGAACGCTCCCGACCGAAAAATAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(181-254)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-171)

Competence-damaged protein (CinA)

(259-412)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mutans UA159

51.306

100

0.519
  cinA Streptococcus mitis SK321

50.714

100

0.512
  cinA Streptococcus mitis NCTC 12261

50.714

100

0.512
  cinA Streptococcus pneumoniae TIGR4

49.286

100

0.498
  cinA Streptococcus pneumoniae Rx1

49.286

100

0.498
  cinA Streptococcus pneumoniae R6

49.286

100

0.498
  cinA Streptococcus pneumoniae D39

49.048

100

0.495
  cinA Bacillus subtilis subsp. subtilis str. 168

46.715

98.798

0.462
  cinA Streptococcus suis isolate S10

41.928

99.76

0.418

Multiple sequence alignment