Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ACI6O9_RS09870 Genome accession   NZ_OY725316
Coordinates   2002827..2003900 (-) Length   357 a.a.
NCBI ID   WP_057707637.1    Uniprot ID   -
Organism   Lactiplantibacillus xiangfangensis strain IMDO EBMM8     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1997827..2008900
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACI6O9_RS09855 (LXEBMM8_EKPBGFGD_01972) - 1999290..2000096 (-) 807 WP_057707635.1 TIGR00282 family metallophosphoesterase -
  ACI6O9_RS09860 (LXEBMM8_EKPBGFGD_01973) - 2000253..2000855 (-) 603 WP_083491669.1 helix-turn-helix domain-containing protein -
  ACI6O9_RS09865 (LXEBMM8_EKPBGFGD_01974) rny 2001054..2002613 (-) 1560 WP_057707636.1 ribonuclease Y -
  ACI6O9_RS09870 (LXEBMM8_EKPBGFGD_01975) recA 2002827..2003900 (-) 1074 WP_057707637.1 recombinase RecA Machinery gene
  ACI6O9_RS09875 (LXEBMM8_EKPBGFGD_01976) cinA 2003997..2005253 (-) 1257 WP_057707638.1 competence/damage-inducible protein A Machinery gene
  ACI6O9_RS09880 (LXEBMM8_EKPBGFGD_01977) pgsA 2005739..2006323 (-) 585 WP_057707639.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ACI6O9_RS09885 (LXEBMM8_EKPBGFGD_01978) - 2006346..2007230 (-) 885 WP_057707640.1 RodZ domain-containing protein -
  ACI6O9_RS09890 (LXEBMM8_EKPBGFGD_01979) yfmH 2007317..2008636 (-) 1320 WP_057707641.1 EF-P 5-aminopentanol modification-associated protein YfmH -

Sequence

Protein


Download         Length: 357 a.a.        Molecular weight: 38409.32 Da        Isoelectric Point: 4.6716

>NTDB_id=1160592 ACI6O9_RS09870 WP_057707637.1 2002827..2003900(-) (recA) [Lactiplantibacillus xiangfangensis strain IMDO EBMM8]
MADARQAALDAALKKIEKNFGKGSIMRMGDAANTQISTVSSGSLALDDALGVGGYPRGRIVEIYGPESSGKTTVALHAVA
EVQKQGGTAAYIDAENALDPVYAEHLGVNIDDLLLSQPDTGEQGLEIADALVSSGAVDILVIDSVAALVPRAEIEGEMGD
AHVGLQARLMSQALRKLSGTLNKTKTIALFINQIREKVGVMFGNPETTPGGRALKFYATIRLEVRRAEQIKDGTDIIGNR
VRIKVVKNKVAPPFKRAEVDIMYGYGISQTGEIVDMAADKDIVKKSGSWYSYGEDRIGQGRENAKKYLAEHPDVMAEIRQ
KVRDAYGMDASPEDEEEAADKQTDPTELDLGDDQTDK

Nucleotide


Download         Length: 1074 bp        

>NTDB_id=1160592 ACI6O9_RS09870 WP_057707637.1 2002827..2003900(-) (recA) [Lactiplantibacillus xiangfangensis strain IMDO EBMM8]
TTGGCTGATGCACGGCAAGCAGCATTAGATGCTGCCTTAAAAAAGATTGAAAAGAACTTCGGTAAAGGGTCCATTATGCG
AATGGGCGATGCGGCGAATACCCAAATTTCGACCGTTTCAAGTGGATCATTAGCCTTAGACGATGCGTTAGGTGTAGGTG
GTTATCCCCGTGGCCGAATCGTTGAAATCTACGGTCCTGAAAGTTCTGGTAAAACGACCGTGGCGCTACATGCCGTTGCG
GAAGTTCAAAAGCAGGGCGGAACGGCGGCGTATATTGATGCTGAAAACGCACTGGATCCGGTTTATGCGGAACATTTAGG
CGTTAACATTGATGATCTCCTATTGTCACAACCCGATACTGGTGAACAAGGTCTTGAAATTGCAGATGCCTTAGTTTCCA
GTGGGGCGGTTGATATCTTGGTTATCGACTCTGTGGCGGCATTAGTGCCACGGGCTGAAATCGAAGGTGAGATGGGTGAC
GCGCACGTTGGGCTGCAAGCCCGGTTAATGTCACAAGCGTTGCGGAAGTTATCCGGGACGTTGAATAAGACTAAGACGAT
TGCGTTATTTATTAACCAAATTCGTGAAAAAGTCGGTGTGATGTTCGGTAACCCTGAAACGACTCCTGGTGGTCGGGCGC
TTAAGTTCTACGCAACGATTCGGCTTGAAGTACGTCGGGCGGAACAGATCAAGGACGGGACCGATATTATTGGGAACCGT
GTCCGAATCAAAGTCGTCAAGAACAAGGTTGCGCCGCCATTTAAGCGGGCCGAAGTCGATATCATGTACGGCTATGGAAT
CTCACAAACGGGTGAAATTGTCGACATGGCGGCTGATAAGGACATCGTTAAGAAGAGTGGTTCATGGTATTCTTACGGCG
AGGACCGGATTGGTCAAGGTCGTGAAAATGCGAAGAAGTACTTGGCAGAACATCCTGACGTGATGGCGGAAATTCGTCAG
AAAGTCCGGGATGCTTATGGCATGGACGCGTCTCCTGAAGATGAGGAAGAAGCAGCTGATAAGCAGACTGACCCAACCGA
ATTAGACCTCGGTGACGATCAAACTGATAAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

86.787

93.277

0.81
  recA Bacillus subtilis subsp. subtilis str. 168

75.988

92.157

0.7
  recA Streptococcus pneumoniae Rx1

65.565

100

0.667
  recA Streptococcus pneumoniae D39

65.565

100

0.667
  recA Streptococcus pneumoniae R6

65.565

100

0.667
  recA Streptococcus pneumoniae TIGR4

65.565

100

0.667
  recA Streptococcus mitis SK321

66.295

100

0.667
  recA Streptococcus pyogenes NZ131

66.573

99.72

0.664
  recA Streptococcus mitis NCTC 12261

65.738

100

0.661
  recA Streptococcus mutans UA159

65.812

98.319

0.647
  recA Lactococcus lactis subsp. cremoris KW2

69.512

91.877

0.639
  recA Vibrio cholerae strain A1552

58.405

98.319

0.574
  recA Vibrio cholerae O1 biovar El Tor strain E7946

58.405

98.319

0.574
  recA Ralstonia pseudosolanacearum GMI1000

65.176

87.675

0.571
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.769

91.036

0.571
  recA Acinetobacter baylyi ADP1

58.333

97.479

0.569
  recA Neisseria gonorrhoeae MS11

60.909

92.437

0.563
  recA Neisseria gonorrhoeae strain FA1090

60.909

92.437

0.563
  recA Neisseria gonorrhoeae MS11

60.909

92.437

0.563
  recA Acinetobacter baumannii D1279779

58.48

95.798

0.56
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.235

95.238

0.555
  recA Pseudomonas stutzeri DSM 10701

61.3

90.476

0.555
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.756

91.877

0.549
  recA Glaesserella parasuis strain SC1401

60.559

90.196

0.546
  recA Helicobacter pylori 26695

58.025

90.756

0.527
  recA Helicobacter pylori strain NCTC11637

58.025

90.756

0.527

Multiple sequence alignment