Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   ACI6O9_RS09875 Genome accession   NZ_OY725316
Coordinates   2003997..2005253 (-) Length   418 a.a.
NCBI ID   WP_057707638.1    Uniprot ID   -
Organism   Lactiplantibacillus xiangfangensis strain IMDO EBMM8     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1998997..2010253
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACI6O9_RS09855 (LXEBMM8_EKPBGFGD_01972) - 1999290..2000096 (-) 807 WP_057707635.1 TIGR00282 family metallophosphoesterase -
  ACI6O9_RS09860 (LXEBMM8_EKPBGFGD_01973) - 2000253..2000855 (-) 603 WP_083491669.1 helix-turn-helix domain-containing protein -
  ACI6O9_RS09865 (LXEBMM8_EKPBGFGD_01974) rny 2001054..2002613 (-) 1560 WP_057707636.1 ribonuclease Y -
  ACI6O9_RS09870 (LXEBMM8_EKPBGFGD_01975) recA 2002827..2003900 (-) 1074 WP_057707637.1 recombinase RecA Machinery gene
  ACI6O9_RS09875 (LXEBMM8_EKPBGFGD_01976) cinA 2003997..2005253 (-) 1257 WP_057707638.1 competence/damage-inducible protein A Machinery gene
  ACI6O9_RS09880 (LXEBMM8_EKPBGFGD_01977) pgsA 2005739..2006323 (-) 585 WP_057707639.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ACI6O9_RS09885 (LXEBMM8_EKPBGFGD_01978) - 2006346..2007230 (-) 885 WP_057707640.1 RodZ domain-containing protein -
  ACI6O9_RS09890 (LXEBMM8_EKPBGFGD_01979) yfmH 2007317..2008636 (-) 1320 WP_057707641.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  ACI6O9_RS09895 (LXEBMM8_EKPBGFGD_01980) yfmF 2008627..2009895 (-) 1269 WP_157061178.1 EF-P 5-aminopentanol modification-associated protein YfmF -

Sequence

Protein


Download         Length: 418 a.a.        Molecular weight: 44675.74 Da        Isoelectric Point: 5.2292

>NTDB_id=1160593 ACI6O9_RS09875 WP_057707638.1 2003997..2005253(-) (cinA) [Lactiplantibacillus xiangfangensis strain IMDO EBMM8]
MQAEIIAVGTEILLGQITNTNSTHIAQGLAELGIDSYYQTVVGDNPKRLAAVLEIAAQRNDLVILSGGLGPTKDDLTKQT
LAKYLNVPLVEDAAAMQVITDRFEQTGKVMTENNRLQALYPKGATPLTNHNGLAVGAFYQSPDSADFLLLPGPPREMTKM
FDTEAKPKLQAAYGQQAQIYSRVLRFFGIGESRLVTELQAMIASQHDVTIAPYAKTNEVTLRLSAQADTQRAADSALDAV
EQKIKAKVGDYFYGYGDDNSLAQVVVQAMIKANLSITAAESLTAGEFQSTIGGVAGVSAIFPGGFVTYANAAKHQLVNVP
QTVIDQDGVVSEAAAIAMADGARVRLGTDTALSFTGVAGPDSLEGQPAGTVWIGLAYRDQPTVGKLYHFVGDRQKIRQRS
VMVGLDLLRHALLADHQL

Nucleotide


Download         Length: 1257 bp        

>NTDB_id=1160593 ACI6O9_RS09875 WP_057707638.1 2003997..2005253(-) (cinA) [Lactiplantibacillus xiangfangensis strain IMDO EBMM8]
ATGCAAGCTGAAATAATTGCGGTCGGGACTGAGATTTTACTCGGCCAAATCACAAATACCAATAGTACACACATTGCTCA
GGGTTTAGCAGAACTGGGCATCGATAGTTATTACCAAACGGTCGTGGGCGATAATCCGAAGCGGTTAGCGGCCGTCCTTG
AAATTGCGGCTCAACGCAACGACTTAGTAATTCTTTCTGGGGGCTTAGGTCCCACTAAGGATGATCTGACCAAGCAAACG
TTAGCTAAGTACTTGAACGTGCCGTTAGTGGAAGACGCTGCGGCCATGCAAGTGATTACGGACCGGTTTGAGCAAACGGG
TAAGGTCATGACTGAAAACAATCGGTTGCAGGCGTTATATCCAAAGGGTGCGACGCCGTTGACGAACCATAACGGGTTAG
CCGTAGGGGCGTTTTACCAGTCACCAGATTCCGCGGATTTCTTACTACTCCCCGGGCCACCACGCGAAATGACAAAAATG
TTTGATACCGAAGCCAAGCCCAAACTACAGGCGGCGTATGGTCAGCAAGCCCAGATCTATTCGCGGGTGCTTCGATTCTT
CGGTATTGGAGAATCACGGCTAGTGACCGAATTGCAAGCGATGATTGCGTCACAACACGACGTGACAATTGCGCCTTACG
CGAAGACCAATGAGGTCACTCTTAGGCTCAGTGCACAGGCTGATACGCAACGGGCGGCCGACAGTGCGTTAGATGCGGTT
GAGCAAAAAATCAAAGCTAAGGTTGGCGACTATTTTTATGGCTACGGGGATGACAATTCCTTGGCCCAGGTCGTTGTTCA
AGCGATGATTAAGGCTAATTTAAGTATTACGGCGGCGGAGAGTTTAACGGCTGGTGAATTCCAAAGTACGATCGGTGGGG
TCGCCGGGGTTTCCGCTATTTTTCCAGGTGGCTTCGTGACTTATGCTAACGCGGCTAAACACCAACTCGTTAACGTTCCA
CAAACGGTCATTGACCAAGATGGGGTCGTTTCTGAAGCAGCTGCGATCGCCATGGCTGATGGTGCACGGGTTCGATTAGG
CACGGATACCGCGCTCAGCTTTACGGGGGTTGCGGGTCCTGACAGTTTGGAGGGGCAACCCGCTGGAACGGTCTGGATCG
GTTTAGCTTACCGTGACCAGCCGACCGTTGGGAAGTTATATCACTTTGTTGGGGATCGCCAAAAGATTCGGCAACGCAGT
GTCATGGTTGGTCTGGACCTGTTACGACACGCTTTATTGGCTGATCACCAGCTCTAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(181-254)

Competence-damaged protein (CinA)

(259-411)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis SK321

50.355

100

0.51
  cinA Streptococcus mutans UA159

50.119

100

0.505
  cinA Streptococcus pneumoniae TIGR4

49.645

100

0.502
  cinA Streptococcus pneumoniae Rx1

49.409

100

0.5
  cinA Streptococcus mitis NCTC 12261

49.409

100

0.5
  cinA Streptococcus pneumoniae R6

49.409

100

0.5
  cinA Streptococcus pneumoniae D39

49.173

100

0.498
  cinA Bacillus subtilis subsp. subtilis str. 168

45.455

97.368

0.443
  cinA Streptococcus suis isolate S10

41.587

99.522

0.414

Multiple sequence alignment