Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   QOS94_RS06095 Genome accession   NZ_OX460976
Coordinates   1323630..1324784 (+) Length   384 a.a.
NCBI ID   WP_229251371.1    Uniprot ID   -
Organism   Carnobacterium maltaromaticum strain SF2022 isolate SF2022     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1318630..1329784
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QOS94_RS06080 pgsA 1319927..1320505 (+) 579 WP_010054237.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  QOS94_RS06085 - 1320617..1322011 (+) 1395 WP_229251372.1 metallophosphoesterase -
  QOS94_RS06090 cinA 1322065..1323324 (+) 1260 WP_010054239.1 competence/damage-inducible protein A Machinery gene
  QOS94_RS06095 recA 1323630..1324784 (+) 1155 WP_229251371.1 recombinase RecA Machinery gene
  QOS94_RS06100 rny 1325182..1326738 (+) 1557 WP_029451935.1 ribonuclease Y -
  QOS94_RS06105 - 1326921..1327730 (+) 810 WP_010054242.1 TIGR00282 family metallophosphoesterase -
  QOS94_RS06110 - 1327727..1328116 (+) 390 WP_010054244.1 YlbF family regulator -

Sequence

Protein


Download         Length: 384 a.a.        Molecular weight: 41567.50 Da        Isoelectric Point: 4.8737

>NTDB_id=1159505 QOS94_RS06095 WP_229251371.1 1323630..1324784(+) (recA) [Carnobacterium maltaromaticum strain SF2022 isolate SF2022]
MADDRKQALDAALKKIEKNFGKGSVMKLGEKIDTQVLTIPSGSLALDVALGVGGYPKGRIIEVYGPESSGKTTVSLHAVA
EVQKQGGIAAFIDAEHALDPKYAAALGVNIDELLLSQPDTGEQALEIADALVSSGAIDIVVVDSVAALVPRAEIEGEMGD
SHVGLQARLMSQALRKLSGSINKTKTIALFINQIREKVGVMFGNPEVTPGGRALKFYATVRLEVRRAEQIKNGTDVVGNR
TKIKVVKNKVAPPFKVAEVDIMYGEGISQVGELLDMGSEKDIVNKSGAWYSYEGERIGQGRENAKKYFMENPELRVEIEQ
KVRAAYGIGEEVVEEEKTEPVKNEKKAVEKKVSEAESIAVDKIAKENENQTEIVLDLPEIEPEK

Nucleotide


Download         Length: 1155 bp        

>NTDB_id=1159505 QOS94_RS06095 WP_229251371.1 1323630..1324784(+) (recA) [Carnobacterium maltaromaticum strain SF2022 isolate SF2022]
ATGGCAGATGATCGCAAACAAGCCCTAGATGCAGCATTGAAAAAAATTGAAAAGAATTTTGGTAAAGGTTCAGTAATGAA
GCTTGGCGAAAAAATTGATACTCAAGTTTTGACAATACCTAGTGGGTCTTTAGCCTTGGATGTAGCGTTAGGAGTAGGCG
GGTATCCTAAGGGACGGATTATTGAAGTGTACGGTCCTGAAAGTTCAGGTAAAACAACAGTTTCTTTACATGCTGTAGCA
GAAGTTCAAAAACAAGGTGGAATTGCTGCCTTTATTGATGCTGAGCATGCGTTAGATCCTAAATATGCTGCAGCATTAGG
AGTAAATATTGATGAGTTATTACTATCTCAACCAGATACAGGTGAGCAGGCCTTGGAAATCGCCGATGCGTTGGTTTCTA
GTGGTGCTATTGATATTGTGGTGGTTGATTCGGTAGCTGCTTTAGTGCCTAGAGCAGAGATTGAAGGGGAGATGGGCGAT
AGCCATGTCGGTTTACAAGCTCGTTTAATGTCTCAAGCTTTACGTAAACTGTCAGGTTCTATCAATAAAACCAAAACGAT
TGCTTTGTTTATTAACCAAATTCGTGAAAAAGTTGGAGTCATGTTTGGAAATCCAGAAGTAACACCGGGTGGTAGAGCGT
TGAAATTTTATGCAACTGTTCGTTTGGAAGTTCGTCGAGCGGAACAAATTAAAAATGGCACAGATGTAGTTGGAAATCGC
ACTAAAATTAAAGTCGTAAAAAATAAAGTTGCGCCACCATTTAAAGTTGCTGAAGTAGATATTATGTACGGGGAAGGTAT
TTCTCAAGTAGGAGAATTACTGGATATGGGATCAGAAAAAGATATAGTAAATAAAAGTGGTGCTTGGTATTCATATGAAG
GTGAACGTATTGGTCAAGGTCGTGAAAATGCGAAGAAATATTTTATGGAAAACCCAGAATTAAGAGTAGAAATTGAACAA
AAGGTTCGAGCAGCTTATGGGATTGGTGAAGAAGTTGTTGAAGAAGAAAAAACAGAACCTGTAAAAAATGAAAAAAAAGC
GGTTGAAAAAAAAGTTTCTGAGGCTGAATCGATAGCTGTAGATAAAATAGCTAAAGAAAATGAGAATCAAACAGAAATTG
TGTTAGATTTACCTGAAATTGAGCCAGAAAAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

80.175

89.323

0.716
  recA Bacillus subtilis subsp. subtilis str. 168

79.077

84.635

0.669
  recA Streptococcus pneumoniae Rx1

71.225

91.406

0.651
  recA Streptococcus pneumoniae D39

71.225

91.406

0.651
  recA Streptococcus pneumoniae R6

71.225

91.406

0.651
  recA Streptococcus pneumoniae TIGR4

71.225

91.406

0.651
  recA Streptococcus mitis NCTC 12261

71.93

89.063

0.641
  recA Streptococcus mitis SK321

71.93

89.063

0.641
  recA Streptococcus mutans UA159

71.345

89.063

0.635
  recA Streptococcus pyogenes NZ131

72.81

86.198

0.628
  recA Lactococcus lactis subsp. cremoris KW2

68.997

85.677

0.591
  recA Neisseria gonorrhoeae strain FA1090

63.824

88.542

0.565
  recA Neisseria gonorrhoeae MS11

63.824

88.542

0.565
  recA Neisseria gonorrhoeae MS11

63.824

88.542

0.565
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.526

85.156

0.549
  recA Ralstonia pseudosolanacearum GMI1000

66.134

81.51

0.539
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.997

85.156

0.536
  recA Acinetobacter baumannii D1279779

63.467

84.115

0.534
  recA Vibrio cholerae O1 biovar El Tor strain E7946

63.158

84.115

0.531
  recA Vibrio cholerae strain A1552

63.158

84.115

0.531
  recA Pseudomonas stutzeri DSM 10701

62.654

84.375

0.529
  recA Acinetobacter baylyi ADP1

62.539

84.115

0.526
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.398

85.677

0.526
  recA Glaesserella parasuis strain SC1401

63.009

83.073

0.523
  recA Helicobacter pylori 26695

59.639

86.458

0.516
  recA Helicobacter pylori strain NCTC11637

59.639

86.458

0.516

Multiple sequence alignment