Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   QOS94_RS06090 Genome accession   NZ_OX460976
Coordinates   1322065..1323324 (+) Length   419 a.a.
NCBI ID   WP_010054239.1    Uniprot ID   A0AAW9JPA7
Organism   Carnobacterium maltaromaticum strain SF2022 isolate SF2022     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1317065..1328324
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QOS94_RS06075 - 1317714..1319789 (+) 2076 WP_229251373.1 Na+/H+ antiporter -
  QOS94_RS06080 pgsA 1319927..1320505 (+) 579 WP_010054237.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  QOS94_RS06085 - 1320617..1322011 (+) 1395 WP_229251372.1 metallophosphoesterase -
  QOS94_RS06090 cinA 1322065..1323324 (+) 1260 WP_010054239.1 competence/damage-inducible protein A Machinery gene
  QOS94_RS06095 recA 1323630..1324784 (+) 1155 WP_229251371.1 recombinase RecA Machinery gene
  QOS94_RS06100 rny 1325182..1326738 (+) 1557 WP_029451935.1 ribonuclease Y -
  QOS94_RS06105 - 1326921..1327730 (+) 810 WP_010054242.1 TIGR00282 family metallophosphoesterase -
  QOS94_RS06110 - 1327727..1328116 (+) 390 WP_010054244.1 YlbF family regulator -

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 45247.98 Da        Isoelectric Point: 5.2090

>NTDB_id=1159504 QOS94_RS06090 WP_010054239.1 1322065..1323324(+) (cinA) [Carnobacterium maltaromaticum strain SF2022 isolate SF2022]
MKAEIIAVGTELLLGQIVNSNAAFLSQELAVLGINVYHHVVVGDNPERLDQVLTEAEKRSDLIILSGGLGPTKDDMTKQT
IAAHLNRSLITDAATLKTIVEYHEKTKRPMPENNKLQAVVIEGSTVLKNPTGLAAGMFIKENGKMYVLLPGPPSELKPMF
LQEARPLLLANSDKPELLVSRVLRFFGIGESKLVTILDDLIENQKNPTIAPYAGVHEVTLRLTANGGSEKACNELLDRLE
ATIQERVGTYFYGYGDETTLVEVVVDLLKEKKLKITAAESLTGGAFQSLLASVSGVSATFDGGVVTYSNESKTKVLGVSP
DTIKQYGVVSEACSIEMAEGVKQLYGTDIAISFTGVAGPETLENQPAGTVWIGLAVTGQKTIAKCFHFGRNRNGNREQAA
LSGLEMVRRILKNIPLDEE

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=1159504 QOS94_RS06090 WP_010054239.1 1322065..1323324(+) (cinA) [Carnobacterium maltaromaticum strain SF2022 isolate SF2022]
ATGAAAGCAGAAATTATCGCAGTTGGAACGGAATTATTATTAGGACAAATCGTTAATAGCAATGCGGCTTTTCTTTCACA
AGAGTTGGCTGTATTAGGAATTAATGTGTATCATCATGTTGTGGTTGGAGATAATCCTGAGCGGCTAGATCAAGTATTAA
CAGAAGCTGAAAAACGTAGTGATCTAATTATTCTTTCAGGAGGCTTAGGGCCCACTAAAGATGATATGACGAAACAAACA
ATCGCAGCGCACTTAAATCGATCACTTATAACAGATGCAGCAACACTAAAAACAATTGTTGAATATCATGAAAAAACGAA
ACGACCGATGCCTGAAAATAATAAATTGCAAGCTGTTGTAATAGAAGGTTCAACAGTTTTAAAAAATCCAACAGGTTTAG
CAGCAGGAATGTTTATAAAAGAGAATGGAAAAATGTATGTATTGCTACCAGGACCACCTAGCGAATTAAAGCCAATGTTT
TTACAAGAAGCAAGACCTTTACTATTAGCAAATAGTGATAAACCTGAACTGCTTGTTTCAAGAGTATTGCGCTTTTTTGG
TATAGGTGAATCGAAATTAGTTACGATTTTAGATGACTTAATTGAAAATCAAAAAAACCCAACGATTGCTCCCTATGCTG
GAGTTCATGAAGTAACTTTGCGTTTAACAGCAAATGGAGGCTCTGAGAAAGCCTGTAATGAACTTCTAGATAGATTGGAA
GCAACGATTCAAGAAAGGGTAGGAACGTATTTTTATGGCTATGGAGACGAAACAACATTAGTTGAAGTGGTTGTTGATTT
ATTAAAAGAAAAAAAATTGAAGATAACAGCTGCAGAAAGTTTAACAGGAGGAGCTTTTCAAAGTTTACTAGCTAGCGTTT
CAGGAGTTTCTGCTACCTTTGATGGAGGCGTAGTCACTTATAGCAATGAGAGTAAAACAAAGGTATTAGGCGTATCTCCC
GACACAATTAAGCAGTATGGAGTTGTTAGCGAGGCATGCAGTATTGAAATGGCAGAAGGTGTTAAACAGTTATACGGAAC
AGATATAGCTATTTCTTTTACAGGAGTGGCAGGTCCAGAGACATTAGAAAATCAGCCAGCAGGAACAGTTTGGATTGGAT
TAGCGGTAACAGGTCAAAAAACAATTGCGAAATGTTTTCATTTTGGTAGGAATCGAAATGGCAATCGCGAACAAGCCGCA
TTAAGTGGATTAGAAATGGTTCGTCGCATATTAAAAAATATTCCGCTAGATGAAGAGTGA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-168)

Competence-damaged protein (CinA)

(258-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

53.155

98.329

0.523
  cinA Streptococcus mutans UA159

51.691

98.807

0.511
  cinA Streptococcus mitis SK321

49.403

100

0.494
  cinA Streptococcus mitis NCTC 12261

48.926

100

0.489
  cinA Streptococcus pneumoniae TIGR4

48.449

100

0.484
  cinA Streptococcus pneumoniae Rx1

48.21

100

0.482
  cinA Streptococcus pneumoniae R6

48.21

100

0.482
  cinA Streptococcus pneumoniae D39

47.971

100

0.48
  cinA Streptococcus suis isolate S10

41.787

98.807

0.413

Multiple sequence alignment