Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   P6S15_RS13680 Genome accession   NZ_OX443570
Coordinates   2717796..2718869 (+) Length   357 a.a.
NCBI ID   WP_318765827.1    Uniprot ID   -
Organism   Lactiplantibacillus carotarum strain AMBF275     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2712796..2723869
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P6S15_RS13660 (P6S16_RS13750) yfmH 2713371..2714690 (+) 1320 WP_318765823.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  P6S15_RS13665 (P6S16_RS13755) - 2714778..2715653 (+) 876 WP_318765824.1 RodZ domain-containing protein -
  P6S15_RS13670 (P6S16_RS13760) pgsA 2715673..2716257 (+) 585 WP_318765825.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  P6S15_RS13675 (P6S16_RS13765) cinA 2716443..2717705 (+) 1263 WP_318765826.1 competence/damage-inducible protein A Machinery gene
  P6S15_RS13680 (P6S16_RS13770) recA 2717796..2718869 (+) 1074 WP_318765827.1 recombinase RecA Machinery gene
  P6S15_RS13685 (P6S16_RS13775) rny 2719082..2720641 (+) 1560 WP_318765828.1 ribonuclease Y -
  P6S15_RS13690 (P6S16_RS13780) - 2720691..2721953 (-) 1263 WP_318765829.1 ISL3 family transposase -
  P6S15_RS13695 (P6S16_RS13785) - 2722219..2723025 (+) 807 WP_318765830.1 TIGR00282 family metallophosphoesterase -

Sequence

Protein


Download         Length: 357 a.a.        Molecular weight: 38306.16 Da        Isoelectric Point: 4.6569

>NTDB_id=1158410 P6S15_RS13680 WP_318765827.1 2717796..2718869(+) (recA) [Lactiplantibacillus carotarum strain AMBF275]
MADARQAALDAALKKIEKNFGKGSIMRMGDAANTQISTVSSGSLALDDALGVGGYPRGRIVEIYGPESSGKTTVALHAVA
EVQKQGGTAAYIDAENALDPVYAEHLGVNIDDLLLSQPDTGEQGLEIADALVSSGAVDILVVDSVAALVPRAEIEGEMGD
AHVGLQARLMSQALRKLSGTLNKTKTIALFINQIREKVGVMFGNPEVTPGGRALKFYATIRLEVRRAEQIKDGTDIIGNR
VRIKVVKNKVAPPFKRAEVDIMYGQGISQTGEIVDMAADKDIVKKSGSWYSYGEDRIGQGRENAKKYLAEHPDVMAEIRQ
KVRDAYGMDATNDAEDETTDGQTDPTELDLGDDQTDK

Nucleotide


Download         Length: 1074 bp        

>NTDB_id=1158410 P6S15_RS13680 WP_318765827.1 2717796..2718869(+) (recA) [Lactiplantibacillus carotarum strain AMBF275]
TTGGCTGATGCACGGCAAGCGGCACTCGATGCTGCCTTAAAAAAGATTGAGAAAAACTTCGGTAAGGGCTCCATTATGCG
GATGGGCGATGCGGCGAATACCCAAATCTCGACCGTCTCTAGTGGGTCATTAGCCTTAGACGATGCGTTAGGTGTGGGTG
GTTATCCCCGCGGCCGGATCGTTGAAATTTACGGTCCTGAAAGTTCTGGTAAAACGACCGTGGCGTTACACGCCGTAGCG
GAAGTTCAAAAGCAGGGCGGGACGGCCGCGTATATTGATGCTGAAAACGCGTTGGATCCGGTTTACGCGGAACATTTGGG
TGTCAACATTGATGATTTACTTTTATCACAACCGGATACCGGTGAACAAGGACTCGAAATTGCGGACGCCTTGGTTTCCA
GTGGCGCGGTTGATATCTTAGTTGTCGATTCGGTGGCTGCCTTAGTTCCACGGGCGGAAATCGAAGGCGAAATGGGGGAC
GCCCACGTGGGGTTACAAGCCCGACTGATGTCCCAAGCGTTACGGAAACTCTCCGGGACGTTAAATAAGACGAAGACGAT
TGCGTTATTTATTAATCAAATTCGTGAAAAAGTCGGCGTGATGTTCGGTAACCCCGAAGTAACTCCCGGTGGCCGGGCCC
TTAAGTTCTACGCCACGATTCGGCTAGAAGTTCGGCGGGCGGAACAGATCAAGGACGGGACCGATATTATTGGGAACCGG
GTTCGGATCAAAGTGGTTAAGAACAAGGTTGCGCCGCCATTTAAGCGGGCCGAAGTTGATATTATGTACGGTCAAGGAAT
TTCACAAACTGGTGAAATTGTGGATATGGCCGCGGATAAGGACATCGTTAAGAAGAGTGGCTCTTGGTATTCATACGGTG
AAGATCGCATTGGTCAGGGTCGTGAGAATGCGAAGAAGTACTTGGCAGAACATCCCGACGTGATGGCGGAAATTCGTCAA
AAGGTGCGCGACGCGTACGGCATGGATGCCACCAACGATGCTGAGGATGAAACGACGGACGGTCAGACTGACCCGACCGA
ATTAGACCTTGGTGACGATCAAACTGATAAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

86.391

94.678

0.818
  recA Bacillus subtilis subsp. subtilis str. 168

75.988

92.157

0.7
  recA Streptococcus pneumoniae D39

65.565

100

0.667
  recA Streptococcus pneumoniae R6

65.565

100

0.667
  recA Streptococcus pneumoniae TIGR4

65.565

100

0.667
  recA Streptococcus pneumoniae Rx1

65.565

100

0.667
  recA Streptococcus mitis SK321

66.295

100

0.667
  recA Streptococcus mitis NCTC 12261

65.46

100

0.658
  recA Streptococcus mutans UA159

65.057

98.599

0.641
  recA Streptococcus pyogenes NZ131

69.184

92.717

0.641
  recA Lactococcus lactis subsp. cremoris KW2

68.902

91.877

0.633
  recA Neisseria gonorrhoeae MS11

60.29

96.639

0.583
  recA Neisseria gonorrhoeae strain FA1090

60.29

96.639

0.583
  recA Neisseria gonorrhoeae MS11

60.29

96.639

0.583
  recA Ralstonia pseudosolanacearum GMI1000

63.11

91.877

0.58
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.769

91.036

0.571
  recA Acinetobacter baylyi ADP1

59.064

95.798

0.566
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.037

90.756

0.563
  recA Vibrio cholerae strain A1552

62.037

90.756

0.563
  recA Acinetobacter baumannii D1279779

58.824

95.238

0.56
  recA Pseudomonas stutzeri DSM 10701

61.3

90.476

0.555
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.756

91.877

0.549
  recA Glaesserella parasuis strain SC1401

60.559

90.196

0.546
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.788

92.437

0.543
  recA Helicobacter pylori 26695

58.025

90.756

0.527
  recA Helicobacter pylori strain NCTC11637

58.025

90.756

0.527

Multiple sequence alignment