Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   P6S15_RS13675 Genome accession   NZ_OX443570
Coordinates   2716443..2717705 (+) Length   420 a.a.
NCBI ID   WP_318765826.1    Uniprot ID   -
Organism   Lactiplantibacillus carotarum strain AMBF275     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2711443..2722705
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P6S15_RS13655 (P6S16_RS13745) yfmF 2712113..2713384 (+) 1272 WP_318765822.1 EF-P 5-aminopentanol modification-associated protein YfmF -
  P6S15_RS13660 (P6S16_RS13750) yfmH 2713371..2714690 (+) 1320 WP_318765823.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  P6S15_RS13665 (P6S16_RS13755) - 2714778..2715653 (+) 876 WP_318765824.1 RodZ domain-containing protein -
  P6S15_RS13670 (P6S16_RS13760) pgsA 2715673..2716257 (+) 585 WP_318765825.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  P6S15_RS13675 (P6S16_RS13765) cinA 2716443..2717705 (+) 1263 WP_318765826.1 competence/damage-inducible protein A Machinery gene
  P6S15_RS13680 (P6S16_RS13770) recA 2717796..2718869 (+) 1074 WP_318765827.1 recombinase RecA Machinery gene
  P6S15_RS13685 (P6S16_RS13775) rny 2719082..2720641 (+) 1560 WP_318765828.1 ribonuclease Y -
  P6S15_RS13690 (P6S16_RS13780) - 2720691..2721953 (-) 1263 WP_318765829.1 ISL3 family transposase -

Sequence

Protein


Download         Length: 420 a.a.        Molecular weight: 45054.82 Da        Isoelectric Point: 4.8695

>NTDB_id=1158409 P6S15_RS13675 WP_318765826.1 2716443..2717705(+) (cinA) [Lactiplantibacillus carotarum strain AMBF275]
MQAEIIAVGTEILLGQITNTNSTHIAQGLAELGIDSYYQTVVGDNPQRLAGAIEIAAQRNDLVILAGGLGPTKDDLTKQT
LAQYLNVPLVEDQAAMQVITDRFQQTGKVMTENNRLQALYPEGATPLTNHNGLAVGAFYQSADSADFILLPGPPREMTMM
FDTEAKPKLQATYGQQSQIYSRVLRFFGIGESQLATELQDLIDQQHAVTIAPYAKTNEVTLRLSAQADTQRAAQAAIDDV
EHHIRARVGAYFYGYGDDNSLVRVVINAMIKANLSITAAESLTAGEFQSTIGGVPGVSAIFPGGFVTYANAAKHQLVNVP
QATIDQDGVVSEATAIAMADGARQRLGTDTALSFTGVAGPDSLEGQPAGTVWIGLAYRDQPTVGRLYHFAGDRQKIRERS
VMVGLDLLRHALAADPRLSK

Nucleotide


Download         Length: 1263 bp        

>NTDB_id=1158409 P6S15_RS13675 WP_318765826.1 2716443..2717705(+) (cinA) [Lactiplantibacillus carotarum strain AMBF275]
ATGCAAGCAGAGATTATTGCGGTCGGAACCGAGATTTTACTTGGTCAGATCACGAATACGAATAGTACCCACATTGCCCA
GGGATTAGCGGAACTGGGAATTGATAGTTATTATCAAACGGTGGTTGGGGACAATCCTCAACGGTTAGCCGGAGCGATTG
AAATTGCGGCGCAACGGAACGACTTAGTAATCCTAGCGGGCGGTTTAGGACCGACCAAGGATGATTTAACTAAGCAAACG
TTAGCCCAGTATTTGAACGTTCCGTTGGTGGAAGACCAAGCGGCGATGCAAGTGATCACGGACCGTTTTCAACAAACCGG
TAAAGTGATGACGGAAAATAACCGGTTGCAAGCCCTCTACCCAGAAGGTGCCACGCCCCTAACGAATCATAACGGGTTGG
CGGTCGGGGCCTTCTATCAATCGGCGGATTCCGCGGACTTCATTTTGTTACCCGGACCACCACGTGAAATGACGATGATG
TTCGATACTGAGGCCAAACCAAAGCTTCAGGCGACGTACGGACAACAATCGCAAATCTACTCACGGGTACTGCGTTTCTT
TGGAATTGGTGAATCCCAGTTAGCCACCGAGTTGCAGGACTTAATTGACCAACAACACGCCGTGACGATTGCGCCGTACG
CTAAGACGAACGAGGTGACGTTACGACTAAGTGCCCAGGCGGATACGCAGCGTGCTGCTCAGGCCGCTATTGATGACGTT
GAGCACCACATTCGTGCCCGGGTGGGAGCCTACTTCTACGGTTATGGTGATGATAATTCCTTAGTACGGGTCGTCATTAA
TGCCATGATTAAGGCAAACCTAAGCATTACCGCTGCTGAAAGTTTAACGGCCGGTGAATTTCAGAGTACGATTGGCGGGG
TTCCCGGAGTTTCGGCGATCTTTCCAGGGGGCTTTGTGACGTACGCTAACGCCGCTAAACACCAATTGGTCAACGTTCCT
CAGGCGACGATCGACCAGGACGGCGTTGTCTCGGAAGCCACGGCGATTGCAATGGCCGACGGCGCCCGGCAACGGCTCGG
GACGGATACCGCGCTGAGCTTCACCGGCGTGGCGGGTCCGGACAGCTTGGAAGGTCAGCCAGCGGGGACCGTTTGGATTG
GTCTGGCGTACCGTGATCAACCAACGGTGGGCCGGCTCTATCACTTTGCCGGCGACCGGCAGAAGATTCGTGAACGCAGT
GTGATGGTCGGACTCGACCTATTACGCCACGCGTTAGCGGCTGATCCACGACTCTCAAAATAA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(5-170)

Competence-damaged protein (CinA)

(260-411)

Damage-inducible protein CinA KH domain (CinA_KH)

(181-254)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis SK321

49.882

100

0.502
  cinA Streptococcus pneumoniae TIGR4

49.528

100

0.5
  cinA Streptococcus pneumoniae Rx1

49.292

100

0.498
  cinA Streptococcus pneumoniae R6

49.292

100

0.498
  cinA Streptococcus pneumoniae D39

49.057

100

0.495
  cinA Streptococcus mitis NCTC 12261

48.936

100

0.493
  cinA Streptococcus mutans UA159

47.981

100

0.481
  cinA Bacillus subtilis subsp. subtilis str. 168

46.715

97.857

0.457
  cinA Streptococcus suis isolate S10

41.587

99.048

0.412

Multiple sequence alignment