Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   QWI75_RS10505 Genome accession   NZ_OX365700
Coordinates   2221642..2222742 (+) Length   366 a.a.
NCBI ID   WP_289268530.1    Uniprot ID   A0AA86MZ62
Organism   Nitrospira tepida strain DNF     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2216642..2227742
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QWI75_RS10490 (DNFV4_02181) - 2217208..2218341 (+) 1134 WP_213041707.1 inorganic phosphate transporter -
  QWI75_RS10495 (DNFV4_02182) - 2218587..2219564 (+) 978 WP_213041706.1 hypothetical protein -
  QWI75_RS10500 (DNFV4_02183) - 2220068..2221465 (-) 1398 WP_289268529.1 DUF4403 family protein -
  QWI75_RS10505 (DNFV4_02184) recA 2221642..2222742 (+) 1101 WP_289268530.1 recombinase RecA Machinery gene
  QWI75_RS10510 (DNFV4_02185) - 2222739..2223296 (+) 558 WP_289268531.1 regulatory protein RecX -
  QWI75_RS10515 (DNFV4_02186) alaS 2223321..2225951 (+) 2631 WP_289268532.1 alanine--tRNA ligase -
  QWI75_RS10520 (DNFV4_02187) ruvX 2225941..2226477 (+) 537 WP_289268533.1 Holliday junction resolvase RuvX -
  QWI75_RS10525 (DNFV4_02188) mltG 2226495..2227529 (+) 1035 WP_289268534.1 endolytic transglycosylase MltG -

Sequence

Protein


Download         Length: 366 a.a.        Molecular weight: 39637.44 Da        Isoelectric Point: 9.3957

>NTDB_id=1155796 QWI75_RS10505 WP_289268530.1 2221642..2222742(+) (recA) [Nitrospira tepida strain DNF]
MAEKDDKKRALDLALSQIEKQYGKGAVMKLGTAEVVVDAPVVSSGSLSLDIALGIGGLPRGRVIEIFGPESSGKTTLSLH
VIAEAQKAGGIAAFIDAEHALDLGYARKLGVNTDDLLVSQPDTGEQALEIAETLVRSGAVDLLVIDSVAALVPRAEIEGE
MGDAHMGLQARLMSQALRKLTAAISKSQTMVIFINQIRMKLGVMFGNPETTTGGNALKFYSSVRLDIRRIESIKEGTDVT
GSRVRVKVVKNKMAPPFKQAEFDIMFAEGISKMGELVDLGVEKRVLEKSGAWYSYKGERLGQGREQVRDFLKNNPAIARD
IEHRIRESSGVGAKASDKRSDKDDKHEKKADAKGEEKERRSHAVRG

Nucleotide


Download         Length: 1101 bp        

>NTDB_id=1155796 QWI75_RS10505 WP_289268530.1 2221642..2222742(+) (recA) [Nitrospira tepida strain DNF]
ATGGCCGAAAAGGACGACAAGAAACGCGCGCTGGATCTGGCCCTGTCTCAAATCGAAAAACAGTACGGCAAGGGAGCGGT
GATGAAGCTCGGCACCGCGGAGGTGGTCGTCGACGCCCCGGTCGTGTCCTCCGGCTCGCTGTCGTTGGATATTGCGTTGG
GGATCGGTGGCTTGCCCCGAGGCCGGGTCATCGAGATCTTCGGCCCTGAATCCTCGGGCAAAACGACCCTGTCGCTGCAT
GTGATCGCCGAAGCGCAGAAAGCCGGCGGCATCGCCGCGTTTATCGACGCCGAGCATGCGCTGGATCTCGGCTACGCGCG
CAAATTGGGAGTCAACACGGACGATCTGCTGGTTTCGCAGCCCGATACCGGGGAGCAGGCGCTGGAAATTGCGGAAACGT
TGGTCCGCAGCGGGGCCGTGGATCTGCTGGTGATCGACTCCGTGGCGGCCCTGGTGCCGCGCGCGGAAATCGAAGGGGAA
ATGGGTGACGCCCACATGGGCTTGCAGGCGCGGCTGATGTCGCAGGCCCTGCGGAAATTGACCGCGGCGATCTCCAAATC
CCAGACGATGGTCATTTTCATCAACCAGATTCGTATGAAGCTGGGAGTGATGTTCGGCAATCCGGAGACGACCACCGGCG
GGAACGCCCTCAAATTCTATTCCTCCGTTCGGCTCGACATCCGAAGGATTGAATCGATCAAGGAAGGCACCGACGTGACC
GGCAGCCGCGTCCGGGTCAAGGTGGTGAAGAACAAGATGGCGCCCCCGTTCAAACAGGCGGAATTCGACATCATGTTTGC
GGAAGGCATCTCGAAAATGGGCGAACTGGTCGATCTCGGCGTCGAGAAGCGGGTTTTGGAGAAGTCCGGCGCCTGGTATT
CCTATAAGGGCGAGCGGTTGGGCCAGGGAAGGGAGCAGGTCCGGGATTTCCTAAAGAACAATCCGGCCATCGCCCGCGAT
ATCGAGCATCGAATTCGAGAATCCTCGGGAGTCGGAGCCAAGGCGTCCGACAAGCGGTCCGACAAGGACGACAAACACGA
GAAGAAGGCCGACGCGAAGGGCGAGGAGAAAGAGAGGCGGTCGCACGCGGTGCGGGGGTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-271)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

65.507

94.262

0.617
  recA Ralstonia pseudosolanacearum GMI1000

71.338

85.792

0.612
  recA Bacillus subtilis subsp. subtilis str. 168

68.098

89.071

0.607
  recA Acinetobacter baumannii D1279779

67.593

88.525

0.598
  recA Neisseria gonorrhoeae MS11

64.412

92.896

0.598
  recA Neisseria gonorrhoeae MS11

64.412

92.896

0.598
  recA Neisseria gonorrhoeae strain FA1090

64.412

92.896

0.598
  recA Glaesserella parasuis strain SC1401

63.112

94.809

0.598
  recA Pseudomonas stutzeri DSM 10701

67.702

87.978

0.596
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.529

92.896

0.59
  recA Streptococcus mutans UA159

60.169

96.721

0.582
  recA Vibrio cholerae O1 biovar El Tor strain E7946

65.325

88.251

0.577
  recA Vibrio cholerae strain A1552

65.325

88.251

0.577
  recA Helicobacter pylori strain NCTC11637

63.554

90.71

0.577
  recA Helicobacter pylori 26695

63.554

90.71

0.577
  recA Latilactobacillus sakei subsp. sakei 23K

64.024

89.617

0.574
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.84

90.437

0.568
  recA Streptococcus pneumoniae R6

57.821

97.814

0.566
  recA Streptococcus pneumoniae D39

57.821

97.814

0.566
  recA Streptococcus pneumoniae TIGR4

57.821

97.814

0.566
  recA Streptococcus pneumoniae Rx1

57.821

97.814

0.566
  recA Streptococcus mitis SK321

59.302

93.989

0.557
  recA Streptococcus mitis NCTC 12261

61.027

90.437

0.552
  recA Streptococcus pyogenes NZ131

61.468

89.344

0.549
  recA Lactococcus lactis subsp. cremoris KW2

58.982

91.257

0.538
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.436

87.705

0.53

Multiple sequence alignment