Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   QML72_RS00535 Genome accession   NZ_OX346411
Coordinates   104340..105386 (+) Length   348 a.a.
NCBI ID   WP_281956924.1    Uniprot ID   -
Organism   Enterococcus cecorum isolate CIRMBP-1287     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 99340..110386
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QML72_RS00515 (CIRMBP1287_00100) - 99800..101089 (+) 1290 WP_282007470.1 pitrilysin family protein -
  QML72_RS00520 (CIRMBP1287_00101) - 101277..102215 (+) 939 WP_047333979.1 helix-turn-helix domain-containing protein -
  QML72_RS00525 (CIRMBP1287_00102) pgsA 102326..102904 (+) 579 WP_026209940.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  QML72_RS00530 (CIRMBP1287_00103) cinA 102969..104222 (+) 1254 WP_047241716.1 competence/damage-inducible protein A Machinery gene
  QML72_RS00535 (CIRMBP1287_00104) recA 104340..105386 (+) 1047 WP_281956924.1 recombinase RecA Machinery gene
  QML72_RS00540 (CIRMBP1287_00105) rny 105605..107164 (+) 1560 WP_281956925.1 ribonuclease Y -
  QML72_RS00545 (CIRMBP1287_00106) - 107380..107601 (+) 222 WP_047241714.1 helix-turn-helix transcriptional regulator -
  QML72_RS00550 (CIRMBP1287_00107) - 107588..108349 (+) 762 WP_047241713.1 DUF3169 family protein -
  QML72_RS00555 (CIRMBP1287_00108) - 108378..109277 (+) 900 WP_282007471.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 37455.64 Da        Isoelectric Point: 4.8258

>NTDB_id=1155233 QML72_RS00535 WP_281956924.1 104340..105386(+) (recA) [Enterococcus cecorum isolate CIRMBP-1287]
MADDRKTALDAALKKIEKNFGKGSIMKLGEKADQQISTVPSGSLALDVALGVGGYPRGRIIEVYGPESSGKTTVALHAIA
EVQKQGGTAAFIDAEHALDPAYAKKLGVNIDELLLSQPDTGEQGLEIADALVSSGAVDIIVIDSVAALVPRAEIDGEMGD
THVGLQARLMSQALRKLSGTINKTKTIAIFINQIREKVGVMFGNPETTPGGRALKFYATVRLEVRRSEQLKQGSDIVGNR
TKIKVVKNKVAPPFKVAEIDIMYGEGISQEGELLDMAVDVDLVDKSGAWYSYNGERIGQGRENVKNYMKDHPEMVSELLV
KVRNAYGIGDGTTIEATEETEQETLDLE

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=1155233 QML72_RS00535 WP_281956924.1 104340..105386(+) (recA) [Enterococcus cecorum isolate CIRMBP-1287]
ATGGCCGATGATCGTAAAACAGCCTTAGATGCTGCATTGAAAAAAATAGAAAAAAACTTTGGTAAAGGCTCTATCATGAA
GCTTGGTGAAAAAGCCGACCAACAAATCTCCACCGTACCAAGTGGCTCGCTTGCATTAGATGTCGCTTTAGGAGTAGGGG
GTTATCCAAGAGGACGAATTATTGAAGTATACGGCCCAGAAAGTTCTGGTAAAACTACGGTTGCTTTACATGCGATTGCC
GAAGTTCAAAAACAAGGCGGAACTGCAGCCTTTATCGATGCCGAACACGCTTTAGATCCAGCCTATGCCAAAAAGCTAGG
CGTGAATATTGACGAATTACTTTTATCACAGCCAGATACCGGTGAACAAGGTCTAGAGATTGCCGATGCCCTTGTTTCTA
GTGGAGCGGTCGATATTATTGTCATTGACTCAGTTGCCGCTTTAGTGCCACGTGCCGAAATCGATGGCGAAATGGGGGAT
ACACATGTTGGGTTACAAGCCCGTTTAATGTCTCAAGCCCTACGTAAATTATCTGGTACGATTAATAAGACTAAGACTAT
TGCGATTTTTATCAACCAAATCCGTGAAAAAGTCGGTGTGATGTTTGGTAATCCAGAAACCACACCTGGTGGACGTGCCT
TGAAGTTCTATGCGACCGTTCGTTTAGAAGTGCGTCGTTCTGAACAATTAAAACAAGGTAGCGATATTGTCGGTAACCGT
ACCAAGATTAAAGTCGTGAAAAATAAAGTGGCGCCACCATTTAAAGTCGCTGAAATTGATATCATGTATGGCGAAGGAAT
TTCTCAAGAAGGGGAATTACTAGATATGGCGGTCGATGTTGATTTAGTTGATAAGAGTGGTGCTTGGTATTCGTACAATG
GTGAGCGAATTGGACAAGGTCGCGAAAATGTCAAAAACTATATGAAAGATCACCCAGAAATGGTTAGTGAGCTTTTAGTC
AAAGTTCGTAACGCTTACGGTATTGGTGATGGTACGACCATTGAAGCGACAGAAGAAACCGAACAAGAAACATTAGATTT
AGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

81.098

94.253

0.764
  recA Bacillus subtilis subsp. subtilis str. 168

78.462

93.391

0.733
  recA Streptococcus pyogenes NZ131

68.627

100

0.704
  recA Streptococcus mitis SK321

70.145

99.138

0.695
  recA Streptococcus mitis NCTC 12261

69.452

99.713

0.693
  recA Streptococcus pneumoniae D39

69.565

99.138

0.69
  recA Streptococcus pneumoniae R6

69.565

99.138

0.69
  recA Streptococcus pneumoniae TIGR4

69.565

99.138

0.69
  recA Streptococcus pneumoniae Rx1

69.565

99.138

0.69
  recA Streptococcus mutans UA159

68.195

100

0.684
  recA Lactococcus lactis subsp. cremoris KW2

69.552

96.264

0.67
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.832

93.966

0.609
  recA Neisseria gonorrhoeae strain FA1090

61.449

99.138

0.609
  recA Neisseria gonorrhoeae MS11

61.449

99.138

0.609
  recA Neisseria gonorrhoeae MS11

61.449

99.138

0.609
  recA Ralstonia pseudosolanacearum GMI1000

64.329

94.253

0.606
  recA Glaesserella parasuis strain SC1401

59.827

99.425

0.595
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.614

94.54

0.592
  recA Acinetobacter baylyi ADP1

60.058

98.563

0.592
  recA Vibrio cholerae O1 biovar El Tor strain E7946

63.467

92.816

0.589
  recA Vibrio cholerae strain A1552

63.467

92.816

0.589
  recA Acinetobacter baumannii D1279779

62.848

92.816

0.583
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.909

94.828

0.578
  recA Pseudomonas stutzeri DSM 10701

61.3

92.816

0.569
  recA Helicobacter pylori 26695

59.816

93.678

0.56
  recA Helicobacter pylori strain NCTC11637

59.816

93.678

0.56

Multiple sequence alignment