Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   QML72_RS00530 Genome accession   NZ_OX346411
Coordinates   102969..104222 (+) Length   417 a.a.
NCBI ID   WP_047241716.1    Uniprot ID   -
Organism   Enterococcus cecorum isolate CIRMBP-1287     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 97969..109222
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QML72_RS00510 (CIRMBP1287_00099) - 98542..99807 (+) 1266 WP_282007469.1 pitrilysin family protein -
  QML72_RS00515 (CIRMBP1287_00100) - 99800..101089 (+) 1290 WP_282007470.1 pitrilysin family protein -
  QML72_RS00520 (CIRMBP1287_00101) - 101277..102215 (+) 939 WP_047333979.1 helix-turn-helix domain-containing protein -
  QML72_RS00525 (CIRMBP1287_00102) pgsA 102326..102904 (+) 579 WP_026209940.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  QML72_RS00530 (CIRMBP1287_00103) cinA 102969..104222 (+) 1254 WP_047241716.1 competence/damage-inducible protein A Machinery gene
  QML72_RS00535 (CIRMBP1287_00104) recA 104340..105386 (+) 1047 WP_281956924.1 recombinase RecA Machinery gene
  QML72_RS00540 (CIRMBP1287_00105) rny 105605..107164 (+) 1560 WP_281956925.1 ribonuclease Y -
  QML72_RS00545 (CIRMBP1287_00106) - 107380..107601 (+) 222 WP_047241714.1 helix-turn-helix transcriptional regulator -
  QML72_RS00550 (CIRMBP1287_00107) - 107588..108349 (+) 762 WP_047241713.1 DUF3169 family protein -

Sequence

Protein


Download         Length: 417 a.a.        Molecular weight: 45772.13 Da        Isoelectric Point: 4.9284

>NTDB_id=1155232 QML72_RS00530 WP_047241716.1 102969..104222(+) (cinA) [Enterococcus cecorum isolate CIRMBP-1287]
MNAEIIAVGTEILMGQIVNSNAAYLSEQLANLGINVYYHVAVGDNEKRLTACLERAKSRSDLIVLCGGLGPTQDDLTKQT
VAKFVNQALVYDPTGHARLMDYFAKTKREMTENNLLQALTFKDGRGIANPNGLAVGIYYEDSDHTHYLLLPGPPRELKAM
FRQNVVPLLREINPQDTKLYSRVLRFYGIGESQLVTLLADFIDHQTNPTLAPYAKTNEVTLRLTANASTQDQADRLLDEL
EEKIQALAGAYFYGYGDDFSLAEAMIAQLKEQKRTISVAESLTAGLFASTLGQYPGVSQVFKGGVVTYSLEMKAALLDID
ADYLREVGTVSEACVTLMAKNMQQKAQTDYAIAFSGVAGPDQLEGQAVGTVWMALATPNGVQTYCKQFPHGRNEIRQAAV
MFGLNLVYRALLAEEQA

Nucleotide


Download         Length: 1254 bp        

>NTDB_id=1155232 QML72_RS00530 WP_047241716.1 102969..104222(+) (cinA) [Enterococcus cecorum isolate CIRMBP-1287]
ATGAATGCAGAAATCATTGCAGTCGGAACAGAGATTTTGATGGGGCAAATCGTTAATTCTAATGCGGCCTATCTTTCAGA
GCAATTAGCCAATTTGGGTATTAATGTCTATTATCATGTCGCAGTCGGAGATAATGAAAAGCGATTGACGGCCTGTCTTG
AACGTGCCAAAAGTCGGAGTGATTTAATCGTGCTTTGTGGTGGTTTGGGGCCAACGCAAGATGATTTAACCAAGCAAACT
GTAGCCAAATTTGTCAATCAAGCATTAGTCTATGATCCAACAGGGCATGCACGTTTGATGGATTATTTTGCCAAGACCAA
GCGAGAAATGACCGAAAATAATTTATTACAAGCCCTCACTTTTAAGGATGGTCGTGGTATTGCCAATCCAAATGGTCTAG
CGGTCGGTATTTATTATGAAGATAGCGATCATACCCACTATTTATTATTGCCTGGGCCACCGCGCGAGTTAAAGGCGATG
TTTCGTCAAAATGTTGTGCCACTTTTGCGTGAAATCAATCCGCAAGATACGAAGCTCTATTCTCGGGTGTTGCGTTTTTA
TGGGATTGGCGAATCACAGTTAGTCACGCTTTTAGCTGATTTCATTGACCATCAGACCAACCCTACGCTAGCTCCCTATG
CCAAAACCAATGAAGTGACGTTGCGCTTGACAGCCAATGCATCTACCCAAGATCAAGCGGATAGGTTGCTTGATGAATTA
GAGGAGAAAATTCAAGCTTTGGCCGGTGCTTACTTTTATGGTTATGGGGATGATTTTTCTTTAGCGGAGGCGATGATTGC
CCAATTAAAAGAGCAAAAACGGACAATTAGTGTGGCTGAGAGTTTGACAGCCGGCCTTTTTGCTTCCACCTTGGGACAAT
ATCCGGGGGTGTCACAGGTCTTTAAAGGTGGTGTGGTCACTTATTCGCTTGAGATGAAGGCGGCTTTATTAGATATTGAT
GCTGATTATTTACGAGAAGTCGGGACGGTGAGTGAAGCTTGTGTCACCTTAATGGCTAAAAATATGCAGCAAAAAGCACA
AACGGATTATGCCATTGCTTTTAGTGGCGTGGCAGGACCGGATCAATTAGAAGGCCAAGCAGTCGGAACGGTCTGGATGG
CTTTGGCGACTCCAAATGGGGTACAGACTTATTGCAAACAGTTCCCCCATGGCCGAAATGAAATCCGCCAAGCCGCTGTC
ATGTTTGGGTTAAATCTCGTTTATCGCGCGCTTTTAGCTGAAGAACAAGCCTAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(260-410)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-170)

Damage-inducible protein CinA KH domain (CinA_KH)

(181-254)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus pneumoniae TIGR4

51.773

100

0.525
  cinA Streptococcus pneumoniae R6

51.537

100

0.523
  cinA Streptococcus pneumoniae Rx1

51.537

100

0.523
  cinA Streptococcus pneumoniae D39

51.3

100

0.52
  cinA Streptococcus mitis SK321

51.064

100

0.518
  cinA Streptococcus mutans UA159

50.831

100

0.513
  cinA Streptococcus mitis NCTC 12261

50.355

100

0.511
  cinA Streptococcus suis isolate S10

47.532

92.326

0.439
  cinA Bacillus subtilis subsp. subtilis str. 168

44.39

98.321

0.436

Multiple sequence alignment