Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   OH548_RS02565 Genome accession   NZ_OX335302
Coordinates   598637..599689 (+) Length   350 a.a.
NCBI ID   WP_053949870.1    Uniprot ID   -
Organism   Apilactobacillus apinorum strain Fhon13     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 593637..604689
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OH548_RS02540 (AAPFHON13_05080) yfmF 593954..595228 (+) 1275 WP_053949865.1 EF-P 5-aminopentanol modification-associated protein YfmF -
  OH548_RS02545 (AAPFHON13_05090) yfmH 595218..596474 (+) 1257 WP_053949866.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  OH548_RS02550 (AAPFHON13_05100) - 596553..597398 (+) 846 WP_053949867.1 helix-turn-helix domain-containing protein -
  OH548_RS02555 (AAPFHON13_05110) pgsA 597448..598035 (+) 588 WP_053949868.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  OH548_RS02560 (AAPFHON13_05120) cinA 598080..598544 (+) 465 WP_053949869.1 nicotinamide-nucleotide amidohydrolase family protein Machinery gene
  OH548_RS02565 (AAPFHON13_05130) recA 598637..599689 (+) 1053 WP_053949870.1 recombinase RecA Machinery gene
  OH548_RS02570 (AAPFHON13_05140) rny 599839..601404 (+) 1566 WP_053949871.1 ribonuclease Y -
  OH548_RS02575 (AAPFHON13_05150) - 601483..602283 (+) 801 WP_053949872.1 TIGR00282 family metallophosphoesterase -

Sequence

Protein


Download         Length: 350 a.a.        Molecular weight: 37709.62 Da        Isoelectric Point: 4.6136

>NTDB_id=1154709 OH548_RS02565 WP_053949870.1 598637..599689(+) (recA) [Apilactobacillus apinorum strain Fhon13]
MADERKAALDGALKRIEKEFGKGSIMRMGDRGDTRISTIPTGSLALDNALGVGGFPRGRIVEIYGPESSGKTTIALQAVA
EVQKQGGTAAYIDAENALDPVYATNLGVNIDDLLLSQPDTGEQGLQICDALVSSGAIDIVVVDSVAALVPRAEIEGEMGD
AHVGLQARLMSQALRKLSGSINKTKTIALFINQIREKVGVMFGNPETTPGGRALKFYSTIRLEIRRAEQIKDGTDIIGNR
TKIKVAKNKVAPPFKRAEVDIMYGEGVSQTGELVDMAVEQDIINKSGSWYSYGDERIGQGRENAKQFLKENPDKMEEINL
KVRAAYGMGEDIPETSDESAEQTSLDTGEE

Nucleotide


Download         Length: 1053 bp        

>NTDB_id=1154709 OH548_RS02565 WP_053949870.1 598637..599689(+) (recA) [Apilactobacillus apinorum strain Fhon13]
ATGGCTGATGAACGAAAAGCAGCTCTAGATGGTGCCTTAAAACGAATTGAAAAAGAATTCGGTAAAGGTTCTATTATGAG
AATGGGTGATAGAGGGGATACAAGAATCTCAACTATTCCTACCGGATCTTTAGCATTAGACAATGCTTTAGGTGTAGGTG
GATTCCCACGAGGAAGAATTGTTGAAATCTATGGACCAGAAAGTTCTGGTAAAACTACTATTGCGCTTCAAGCAGTTGCT
GAAGTACAAAAACAAGGTGGTACAGCAGCTTATATCGATGCTGAAAATGCTTTGGATCCAGTATATGCAACTAACCTGGG
TGTTAATATTGATGACTTACTATTATCACAACCAGATACTGGTGAACAAGGTTTACAAATTTGTGACGCCTTAGTATCAA
GTGGAGCAATCGACATCGTAGTTGTCGATTCAGTTGCTGCTTTAGTTCCTAGAGCTGAAATTGAAGGTGAAATGGGTGAC
GCGCATGTTGGTCTACAAGCTAGATTAATGTCACAAGCACTTCGTAAACTTTCAGGTTCTATTAATAAAACTAAAACCAT
TGCACTCTTTATTAACCAAATTAGAGAAAAAGTTGGGGTTATGTTTGGTAACCCAGAAACCACTCCTGGTGGACGTGCTC
TTAAGTTCTACTCAACTATAAGACTAGAAATCAGAAGAGCTGAACAAATTAAAGATGGTACTGATATTATTGGTAACAGA
ACCAAGATTAAAGTTGCTAAGAATAAGGTAGCTCCTCCATTCAAACGTGCTGAAGTTGATATCATGTATGGTGAAGGTGT
TTCTCAAACTGGTGAACTTGTTGACATGGCCGTTGAACAAGATATTATTAATAAGTCTGGTTCATGGTACTCATATGGTG
ATGAAAGAATTGGACAAGGACGTGAAAACGCTAAGCAATTCTTGAAAGAAAACCCAGATAAAATGGAAGAAATTAACCTA
AAGGTTCGTGCTGCATATGGAATGGGTGAAGATATTCCAGAAACTAGCGATGAATCTGCTGAACAAACTAGTTTAGATAC
TGGTGAAGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

80.682

100

0.811
  recA Bacillus subtilis subsp. subtilis str. 168

76.22

93.714

0.714
  recA Streptococcus mitis NCTC 12261

65.556

100

0.674
  recA Streptococcus mitis SK321

65.278

100

0.671
  recA Streptococcus pneumoniae Rx1

63.736

100

0.663
  recA Streptococcus pneumoniae D39

63.736

100

0.663
  recA Streptococcus pneumoniae R6

63.736

100

0.663
  recA Streptococcus pneumoniae TIGR4

63.736

100

0.663
  recA Streptococcus mutans UA159

65.812

100

0.66
  recA Streptococcus pyogenes NZ131

67.674

94.571

0.64
  recA Lactococcus lactis subsp. cremoris KW2

67.47

94.857

0.64
  recA Neisseria gonorrhoeae strain FA1090

64.223

97.429

0.626
  recA Neisseria gonorrhoeae MS11

64.223

97.429

0.626
  recA Neisseria gonorrhoeae MS11

64.223

97.429

0.626
  recA Ralstonia pseudosolanacearum GMI1000

65.176

89.429

0.583
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.398

94

0.577
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.468

93.429

0.574
  recA Acinetobacter baylyi ADP1

61.92

92.286

0.571
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.017

98

0.569
  recA Glaesserella parasuis strain SC1401

61.682

91.714

0.566
  recA Acinetobacter baumannii D1279779

60.991

92.286

0.563
  recA Vibrio cholerae strain A1552

60.991

92.286

0.563
  recA Vibrio cholerae O1 biovar El Tor strain E7946

60.991

92.286

0.563
  recA Pseudomonas stutzeri DSM 10701

60.494

92.571

0.56
  recA Helicobacter pylori strain NCTC11637

57.185

97.429

0.557
  recA Helicobacter pylori 26695

57.185

97.429

0.557

Multiple sequence alignment