Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   OH548_RS02560 Genome accession   NZ_OX335302
Coordinates   598080..598544 (+) Length   154 a.a.
NCBI ID   WP_053949869.1    Uniprot ID   -
Organism   Apilactobacillus apinorum strain Fhon13     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 593080..603544
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OH548_RS02535 (AAPFHON13_05070) - 593082..593942 (+) 861 WP_053949864.1 amino acid ABC transporter substrate-binding protein -
  OH548_RS02540 (AAPFHON13_05080) yfmF 593954..595228 (+) 1275 WP_053949865.1 EF-P 5-aminopentanol modification-associated protein YfmF -
  OH548_RS02545 (AAPFHON13_05090) yfmH 595218..596474 (+) 1257 WP_053949866.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  OH548_RS02550 (AAPFHON13_05100) - 596553..597398 (+) 846 WP_053949867.1 helix-turn-helix domain-containing protein -
  OH548_RS02555 (AAPFHON13_05110) pgsA 597448..598035 (+) 588 WP_053949868.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  OH548_RS02560 (AAPFHON13_05120) cinA 598080..598544 (+) 465 WP_053949869.1 nicotinamide-nucleotide amidohydrolase family protein Machinery gene
  OH548_RS02565 (AAPFHON13_05130) recA 598637..599689 (+) 1053 WP_053949870.1 recombinase RecA Machinery gene
  OH548_RS02570 (AAPFHON13_05140) rny 599839..601404 (+) 1566 WP_053949871.1 ribonuclease Y -
  OH548_RS02575 (AAPFHON13_05150) - 601483..602283 (+) 801 WP_053949872.1 TIGR00282 family metallophosphoesterase -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 16488.76 Da        Isoelectric Point: 4.6967

>NTDB_id=1154708 OH548_RS02560 WP_053949869.1 598080..598544(+) (cinA) [Apilactobacillus apinorum strain Fhon13]
MQFDTSVINSLIEQNKSITAAESLTAGLFQATLGEVSGVSKIFPGGFVTYSNEAKAKLLQIPEPIIQACGVVSSEVAIWM
AQQSRQIMNTNIGVSFTGVAGPDGIEGHSAGTVFIGLDYDGMQSVKQCHFEGTRQEVREQSVAEALELLKLHLK

Nucleotide


Download         Length: 465 bp        

>NTDB_id=1154708 OH548_RS02560 WP_053949869.1 598080..598544(+) (cinA) [Apilactobacillus apinorum strain Fhon13]
ATGCAATTTGACACATCTGTAATTAATAGTTTGATTGAACAGAACAAGTCTATTACTGCTGCAGAAAGTCTAACAGCTGG
ATTATTTCAAGCAACCCTTGGGGAAGTATCAGGAGTATCTAAAATATTTCCTGGTGGATTTGTTACTTATTCCAATGAGG
CTAAAGCAAAGCTATTGCAAATTCCTGAACCTATAATTCAAGCTTGTGGTGTTGTTTCAAGTGAAGTGGCTATTTGGATG
GCACAACAATCTAGACAAATAATGAATACTAATATTGGTGTTTCTTTTACGGGTGTAGCTGGTCCGGATGGAATTGAAGG
ACATTCAGCAGGAACGGTTTTTATTGGGTTAGACTATGATGGAATGCAATCTGTAAAGCAATGTCACTTCGAAGGAACAA
GACAAGAGGTTAGAGAGCAGTCCGTTGCAGAAGCACTTGAATTGTTAAAATTACACTTAAAATAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(4-150)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis SK321

50.676

96.104

0.487
  cinA Streptococcus pneumoniae TIGR4

50

96.104

0.481
  cinA Streptococcus pneumoniae Rx1

50

96.104

0.481
  cinA Streptococcus pneumoniae R6

50

96.104

0.481
  cinA Streptococcus pneumoniae D39

50

96.104

0.481
  cinA Streptococcus mitis NCTC 12261

49.324

96.104

0.474
  cinA Streptococcus mutans UA159

48.966

94.156

0.461
  cinA Bacillus subtilis subsp. subtilis str. 168

41.176

99.351

0.409

Multiple sequence alignment