Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | MD993_RS05825 | Genome accession | NZ_OV648025 |
| Coordinates | 1245149..1246192 (+) | Length | 347 a.a. |
| NCBI ID | WP_000368169.1 | Uniprot ID | A0A7U7JU93 |
| Organism | Staphylococcus argenteus isolate 20S00001-1_long | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 1164214..1246584 | 1245149..1246192 | within | 0 |
Gene organization within MGE regions
Location: 1164214..1246584
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MD993_RS05475 | - | 1164369..1164572 (-) | 204 | WP_001198027.1 | TM2 domain-containing protein | - |
| MD993_RS05480 | - | 1164873..1165361 (+) | 489 | WP_031787794.1 | peptide deformylase | - |
| MD993_RS05485 | fmt | 1165354..1166289 (+) | 936 | WP_000161302.1 | methionyl-tRNA formyltransferase | - |
| MD993_RS05490 | rsmB | 1166286..1167593 (+) | 1308 | WP_031787795.1 | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | - |
| MD993_RS05495 | rlmN | 1167596..1168690 (+) | 1095 | WP_000626892.1 | 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN | - |
| MD993_RS05500 | - | 1168697..1169440 (+) | 744 | WP_000888496.1 | protein-serine/threonine phosphatase Stp1 | - |
| MD993_RS05505 | pknB | 1169437..1171431 (+) | 1995 | WP_031787796.1 | serine/threonine protein kinase Stk1 | - |
| MD993_RS05510 | rsgA | 1171698..1172573 (+) | 876 | WP_000847920.1 | ribosome small subunit-dependent GTPase A | - |
| MD993_RS05515 | rpe | 1172574..1173218 (+) | 645 | WP_237792744.1 | ribulose-phosphate 3-epimerase | - |
| MD993_RS05520 | - | 1173225..1173869 (+) | 645 | WP_031787798.1 | thiamine diphosphokinase | - |
| MD993_RS05525 | rpmB | 1174119..1174307 (-) | 189 | WP_000517908.1 | 50S ribosomal protein L28 | - |
| MD993_RS05530 | - | 1174751..1175125 (+) | 375 | WP_031787799.1 | Asp23/Gls24 family envelope stress response protein | - |
| MD993_RS05535 | fakA | 1175140..1176786 (+) | 1647 | WP_031787800.1 | fatty acid kinase catalytic subunit FakA | - |
| MD993_RS05540 | recG | 1176960..1179020 (+) | 2061 | WP_031787801.1 | ATP-dependent DNA helicase RecG | - |
| MD993_RS05545 | fapR | 1179425..1179997 (+) | 573 | WP_072292002.1 | transcription factor FapR | - |
| MD993_RS05550 | plsX | 1180002..1180988 (+) | 987 | WP_000239751.1 | phosphate acyltransferase PlsX | - |
| MD993_RS05555 | fabD | 1180981..1181907 (+) | 927 | WP_031787802.1 | ACP S-malonyltransferase | - |
| MD993_RS05560 | fabG | 1181900..1182634 (+) | 735 | WP_000167268.1 | 3-oxoacyl-[acyl-carrier-protein] reductase | - |
| MD993_RS05565 | - | 1183104..1183337 (+) | 234 | WP_000426914.1 | acyl carrier protein | - |
| MD993_RS05570 | rnc | 1183453..1184184 (+) | 732 | WP_000043235.1 | ribonuclease III | - |
| MD993_RS05575 | smc | 1184316..1187885 (+) | 3570 | WP_031788253.1 | chromosome segregation protein SMC | - |
| MD993_RS05580 | ftsY | 1187882..1189132 (+) | 1251 | WP_031788254.1 | signal recognition particle-docking protein FtsY | - |
| MD993_RS05585 | - | 1189119..1189451 (+) | 333 | WP_000531321.1 | putative DNA-binding protein | - |
| MD993_RS05590 | ffh | 1189476..1190843 (+) | 1368 | WP_000863483.1 | signal recognition particle protein | - |
| MD993_RS05595 | rpsP | 1191172..1191447 (+) | 276 | WP_000268754.1 | 30S ribosomal protein S16 | - |
| MD993_RS05600 | rimM | 1191634..1192137 (+) | 504 | WP_001261978.1 | ribosome maturation factor RimM | - |
| MD993_RS05605 | trmD | 1192137..1192874 (+) | 738 | WP_031786939.1 | tRNA (guanosine(37)-N1)-methyltransferase TrmD | - |
| MD993_RS05610 | rplS | 1192977..1193327 (+) | 351 | WP_000181404.1 | 50S ribosomal protein L19 | - |
| MD993_RS05615 | - | 1193569..1196175 (-) | 2607 | WP_031786940.1 | YfhO family protein | - |
| MD993_RS05620 | ylqF | 1196575..1197459 (+) | 885 | WP_031786941.1 | ribosome biogenesis GTPase YlqF | - |
| MD993_RS05625 | - | 1197443..1198210 (+) | 768 | WP_031786942.1 | ribonuclease HII | - |
| MD993_RS05630 | sucC | 1198319..1199485 (+) | 1167 | WP_001020805.1 | ADP-forming succinate--CoA ligase subunit beta | - |
| MD993_RS05635 | sucD | 1199507..1200415 (+) | 909 | WP_000110253.1 | succinate--CoA ligase subunit alpha | - |
| MD993_RS05640 | dprA | 1200810..1201682 (+) | 873 | WP_031786943.1 | DNA-processing protein DprA | Machinery gene |
| MD993_RS05645 | topA | 1201856..1203931 (+) | 2076 | WP_072324151.1 | type I DNA topoisomerase | - |
| MD993_RS05650 | trmFO | 1204087..1205394 (+) | 1308 | WP_000195261.1 | FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO | - |
| MD993_RS05655 | xerC | 1205809..1206705 (+) | 897 | WP_031786945.1 | tyrosine recombinase XerC | - |
| MD993_RS05660 | hslV | 1206702..1207247 (+) | 546 | WP_000072683.1 | ATP-dependent protease subunit HslV | - |
| MD993_RS05665 | hslU | 1207312..1208715 (+) | 1404 | WP_000381629.1 | ATP-dependent protease ATPase subunit HslU | - |
| MD993_RS05670 | codY | 1208740..1209513 (+) | 774 | WP_000055333.1 | GTP-sensing pleiotropic transcriptional regulator CodY | - |
| MD993_RS05675 | rpsB | 1209790..1210557 (+) | 768 | WP_000268484.1 | 30S ribosomal protein S2 | - |
| MD993_RS05680 | - | 1210609..1210704 (+) | 96 | WP_225995268.1 | hypothetical protein | - |
| MD993_RS05685 | tsf | 1210739..1211620 (+) | 882 | WP_031786946.1 | translation elongation factor Ts | - |
| MD993_RS05690 | pyrH | 1211757..1212479 (+) | 723 | WP_000057330.1 | UMP kinase | - |
| MD993_RS05695 | frr | 1212498..1213052 (+) | 555 | WP_001280034.1 | ribosome recycling factor | - |
| MD993_RS05700 | - | 1213413..1214183 (+) | 771 | WP_000473698.1 | isoprenyl transferase | - |
| MD993_RS05705 | - | 1214190..1214972 (+) | 783 | WP_000868415.1 | phosphatidate cytidylyltransferase | - |
| MD993_RS05710 | rseP | 1215183..1216469 (+) | 1287 | WP_031786947.1 | RIP metalloprotease RseP | - |
| MD993_RS05715 | - | 1216489..1218192 (+) | 1704 | WP_031786948.1 | proline--tRNA ligase | - |
| MD993_RS05720 | - | 1218466..1222776 (+) | 4311 | WP_078097697.1 | PolC-type DNA polymerase III | - |
| MD993_RS05725 | rimP | 1223052..1223519 (+) | 468 | WP_031786950.1 | ribosome maturation factor RimP | - |
| MD993_RS05730 | nusA | 1223540..1224715 (+) | 1176 | WP_000097470.1 | transcription termination factor NusA | - |
| MD993_RS05735 | rnpM | 1224736..1225020 (+) | 285 | WP_031786951.1 | RNase P modulator RnpM | - |
| MD993_RS05740 | - | 1225017..1225334 (+) | 318 | WP_000021269.1 | YlxQ family RNA-binding protein | - |
| MD993_RS05745 | infB | 1225339..1227465 (+) | 2127 | WP_000043647.1 | translation initiation factor IF-2 | - |
| MD993_RS05750 | rbfA | 1227794..1228144 (+) | 351 | WP_000097321.1 | 30S ribosome-binding factor RbfA | - |
| MD993_RS05755 | truB | 1228316..1229233 (+) | 918 | WP_000282309.1 | tRNA pseudouridine(55) synthase TruB | - |
| MD993_RS05760 | ribF | 1229248..1230219 (+) | 972 | WP_031786952.1 | riboflavin biosynthesis protein RibF | - |
| MD993_RS05765 | rpsO | 1230334..1230603 (+) | 270 | WP_001018327.1 | 30S ribosomal protein S15 | - |
| MD993_RS05770 | pnp | 1230970..1233066 (+) | 2097 | WP_000076680.1 | polyribonucleotide nucleotidyltransferase | - |
| MD993_RS05775 | rnjB | 1233309..1234982 (+) | 1674 | WP_000052592.1 | ribonuclease J2 | - |
| MD993_RS05780 | - | 1235254..1237626 (+) | 2373 | WP_031786953.1 | DNA translocase FtsK | - |
| MD993_RS05785 | - | 1237630..1238343 (+) | 714 | WP_001293301.1 | GntR family transcriptional regulator | - |
| MD993_RS05790 | yfmF | 1238374..1239639 (+) | 1266 | WP_031786954.1 | EF-P 5-aminopentanol modification-associated protein YfmF | - |
| MD993_RS05795 | yfmH | 1239639..1240925 (+) | 1287 | WP_031786955.1 | EF-P 5-aminopentanol modification-associated protein YfmH | - |
| MD993_RS05800 | ymfI | 1240925..1241629 (+) | 705 | WP_000646238.1 | elongation factor P 5-aminopentanone reductase | - |
| MD993_RS05805 | - | 1241737..1242564 (+) | 828 | WP_031786956.1 | DUF3388 domain-containing protein | - |
| MD993_RS05810 | - | 1242589..1242981 (+) | 393 | WP_000859442.1 | RodZ family helix-turn-helix domain-containing protein | - |
| MD993_RS05815 | pgsA | 1243013..1243591 (+) | 579 | WP_031786957.1 | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase | - |
| MD993_RS05820 | - | 1243833..1244984 (+) | 1152 | WP_031786958.1 | CinA family nicotinamide mononucleotide deamidase-related protein | - |
| MD993_RS05825 | recA | 1245149..1246192 (+) | 1044 | WP_000368169.1 | recombinase RecA | Machinery gene |
| MD993_RS12955 | - | 1246374..1246519 (-) | 146 | Protein_1142 | ISL3 family transposase | - |
Sequence
Protein
Download Length: 347 a.a. Molecular weight: 37654.55 Da Isoelectric Point: 4.8509
>NTDB_id=1151892 MD993_RS05825 WP_000368169.1 1245149..1246192(+) (recA) [Staphylococcus argenteus isolate 20S00001-1_long]
MDNDRQKALDTVIKNMEKSFGKGAVMKLGDNIGRRVSTTSTGSVTLDNALGVGGYPKGRIIEIYGPESSGKTTVALHAIA
EVQSNGGVAAFIDAEHALDPEYAQALGVDIDNLYLSQPDHGEQGLEIAEAFVRSGAVDIVVVDSVAALTPKAEIEGEMGD
THVGLQARLMSQALRKLSGAISKSNTTAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGQEIVGNR
TKIKVVKNKVAPPFRVAEVDIMYGQGISKEGELIDLGVENDIVDKSGAWYSYNGERMGQGKENVKMYLKENPQIKEEIDR
KLREKLGISDGDVEEVEDAPKSLFDEE
MDNDRQKALDTVIKNMEKSFGKGAVMKLGDNIGRRVSTTSTGSVTLDNALGVGGYPKGRIIEIYGPESSGKTTVALHAIA
EVQSNGGVAAFIDAEHALDPEYAQALGVDIDNLYLSQPDHGEQGLEIAEAFVRSGAVDIVVVDSVAALTPKAEIEGEMGD
THVGLQARLMSQALRKLSGAISKSNTTAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGQEIVGNR
TKIKVVKNKVAPPFRVAEVDIMYGQGISKEGELIDLGVENDIVDKSGAWYSYNGERMGQGKENVKMYLKENPQIKEEIDR
KLREKLGISDGDVEEVEDAPKSLFDEE
Nucleotide
Download Length: 1044 bp
>NTDB_id=1151892 MD993_RS05825 WP_000368169.1 1245149..1246192(+) (recA) [Staphylococcus argenteus isolate 20S00001-1_long]
TTGGATAACGATCGTCAAAAAGCTTTAGATACAGTAATTAAAAATATGGAGAAATCTTTCGGTAAAGGTGCCGTGATGAA
GTTAGGCGATAATATAGGTCGTCGAGTTTCTACAACGTCAACTGGATCAGTTACACTTGATAACGCATTAGGCGTAGGTG
GCTATCCTAAAGGACGAATTATTGAAATATATGGACCTGAAAGTTCTGGTAAGACAACAGTGGCACTTCATGCTATTGCA
GAAGTGCAAAGCAATGGTGGAGTTGCTGCATTTATCGATGCCGAACATGCATTAGATCCAGAATATGCACAAGCTCTAGG
GGTAGATATTGATAATTTATACTTATCTCAACCTGACCATGGTGAACAAGGGCTTGAAATCGCAGAAGCATTTGTTAGAA
GTGGCGCGGTTGACATCGTAGTTGTAGACTCAGTTGCTGCTTTAACACCTAAAGCTGAAATTGAAGGTGAAATGGGAGAT
ACTCATGTCGGTTTACAAGCGCGTTTAATGTCACAAGCATTACGTAAACTATCTGGTGCTATCTCTAAATCAAATACAAC
TGCTATTTTCATTAACCAAATTCGTGAAAAAGTCGGCGTTATGTTCGGGAATCCGGAGACTACACCTGGTGGGCGCGCAT
TAAAATTCTATAGCTCAGTTAGATTAGAAGTTCGTCGTGCTGAACAACTTAAACAAGGTCAAGAAATCGTTGGTAATAGA
ACGAAGATTAAAGTTGTTAAAAATAAAGTAGCACCTCCATTTAGAGTGGCAGAAGTTGATATTATGTATGGTCAAGGTAT
TTCAAAAGAAGGTGAACTTATTGATTTAGGTGTAGAAAATGACATCGTTGATAAGTCTGGTGCTTGGTACTCATATAATG
GTGAAAGAATGGGCCAAGGTAAAGAAAATGTAAAAATGTACTTGAAAGAAAATCCTCAAATTAAAGAAGAAATTGATCGC
AAGTTACGAGAGAAACTTGGAATTTCTGATGGTGATGTTGAAGAAGTTGAAGACGCACCAAAATCTTTATTTGACGAAGA
ATAG
TTGGATAACGATCGTCAAAAAGCTTTAGATACAGTAATTAAAAATATGGAGAAATCTTTCGGTAAAGGTGCCGTGATGAA
GTTAGGCGATAATATAGGTCGTCGAGTTTCTACAACGTCAACTGGATCAGTTACACTTGATAACGCATTAGGCGTAGGTG
GCTATCCTAAAGGACGAATTATTGAAATATATGGACCTGAAAGTTCTGGTAAGACAACAGTGGCACTTCATGCTATTGCA
GAAGTGCAAAGCAATGGTGGAGTTGCTGCATTTATCGATGCCGAACATGCATTAGATCCAGAATATGCACAAGCTCTAGG
GGTAGATATTGATAATTTATACTTATCTCAACCTGACCATGGTGAACAAGGGCTTGAAATCGCAGAAGCATTTGTTAGAA
GTGGCGCGGTTGACATCGTAGTTGTAGACTCAGTTGCTGCTTTAACACCTAAAGCTGAAATTGAAGGTGAAATGGGAGAT
ACTCATGTCGGTTTACAAGCGCGTTTAATGTCACAAGCATTACGTAAACTATCTGGTGCTATCTCTAAATCAAATACAAC
TGCTATTTTCATTAACCAAATTCGTGAAAAAGTCGGCGTTATGTTCGGGAATCCGGAGACTACACCTGGTGGGCGCGCAT
TAAAATTCTATAGCTCAGTTAGATTAGAAGTTCGTCGTGCTGAACAACTTAAACAAGGTCAAGAAATCGTTGGTAATAGA
ACGAAGATTAAAGTTGTTAAAAATAAAGTAGCACCTCCATTTAGAGTGGCAGAAGTTGATATTATGTATGGTCAAGGTAT
TTCAAAAGAAGGTGAACTTATTGATTTAGGTGTAGAAAATGACATCGTTGATAAGTCTGGTGCTTGGTACTCATATAATG
GTGAAAGAATGGGCCAAGGTAAAGAAAATGTAAAAATGTACTTGAAAGAAAATCCTCAAATTAAAGAAGAAATTGATCGC
AAGTTACGAGAGAAACTTGGAATTTCTGATGGTGATGTTGAAGAAGTTGAAGACGCACCAAAATCTTTATTTGACGAAGA
ATAG
Similar proteins
Only experimentally validated proteins are listed.