Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   KOD61_RS08345 Genome accession   NZ_OU015430
Coordinates   1791086..1792126 (-) Length   346 a.a.
NCBI ID   WP_215218254.1    Uniprot ID   -
Organism   Novilysobacter luteus strain CECT 30171     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1786086..1797126
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KOD61_RS08330 (LYB30171_01664) csrA 1787361..1787564 (-) 204 WP_215218251.1 carbon storage regulator CsrA -
  KOD61_RS08335 (LYB30171_01665) alaS 1787698..1790334 (-) 2637 WP_215218252.1 alanine--tRNA ligase -
  KOD61_RS08340 (LYB30171_01666) recX 1790533..1791069 (-) 537 WP_215218253.1 recombination regulator RecX -
  KOD61_RS08345 (LYB30171_01667) recA 1791086..1792126 (-) 1041 WP_215218254.1 recombinase RecA Machinery gene
  KOD61_RS08350 (LYB30171_01668) lexA 1792299..1792946 (-) 648 WP_215218255.1 transcriptional repressor LexA -
  KOD61_RS08355 (LYB30171_01669) - 1793001..1793501 (-) 501 WP_215218256.1 CinA family protein -
  KOD61_RS08360 (LYB30171_01670) mutS 1793656..1796193 (+) 2538 WP_251370707.1 DNA mismatch repair protein MutS -

Sequence

Protein


Download         Length: 346 a.a.        Molecular weight: 37275.82 Da        Isoelectric Point: 5.3604

>NTDB_id=1150993 KOD61_RS08345 WP_215218254.1 1791086..1792126(-) (recA) [Novilysobacter luteus strain CECT 30171]
MDENKKRALAAALGQIEKQFGKGSVMRMGDRVVEAAEVIGTGSLMLDIALGIGGLPKGRVVEIYGPESSGKTTLTLQAIA
QCQKAGGTAAFIDAEHALDPIYAAKLGVNVDDLLLSQPDTGEQALEIADMLVRSAAVDIVVIDSVAALTPRAEIEGEMGD
QLPGLQARLMSQALRKLTGNIKRSNTLVVFINQLRHKIGQMMPGQSPETTTGGNALKFYASVRLDIRRIGAIKKGDEIIG
NQTKIKVVKNKMAPPFKQVITEILYGQGISREGELIDMGVEAKLVQKAGAWYSMGEERIGQGKENARQYLKENPAVAQRL
EAELREKFVPAEARPGEDDDRDEADA

Nucleotide


Download         Length: 1041 bp        

>NTDB_id=1150993 KOD61_RS08345 WP_215218254.1 1791086..1792126(-) (recA) [Novilysobacter luteus strain CECT 30171]
ATGGACGAGAACAAGAAGCGCGCACTGGCTGCCGCACTGGGCCAGATCGAGAAGCAGTTCGGCAAGGGCTCGGTCATGCG
CATGGGCGACCGCGTGGTGGAGGCGGCCGAGGTCATCGGTACCGGCTCGCTGATGCTCGACATCGCGCTGGGCATCGGCG
GCCTGCCGAAGGGCCGCGTGGTGGAGATCTACGGGCCGGAGTCCTCCGGCAAGACCACCCTGACCCTGCAGGCGATCGCG
CAGTGCCAGAAGGCCGGCGGCACCGCGGCCTTCATCGACGCCGAGCACGCGCTCGACCCGATCTACGCCGCCAAGCTGGG
TGTCAACGTCGACGACCTGCTGCTGAGCCAGCCCGACACCGGCGAACAGGCGCTGGAGATCGCCGACATGCTGGTGCGTT
CGGCCGCGGTCGACATCGTGGTGATCGACTCGGTGGCGGCGCTGACGCCCCGCGCCGAGATCGAGGGCGAGATGGGCGAC
CAGCTGCCGGGCCTGCAGGCGCGACTGATGAGCCAGGCGTTGCGCAAGCTCACCGGCAATATCAAGCGCTCCAACACGCT
GGTGGTGTTCATCAACCAGCTGCGCCACAAGATCGGCCAGATGATGCCGGGCCAGAGCCCGGAGACCACCACCGGTGGCA
ATGCACTGAAGTTCTACGCCTCCGTGCGCCTGGACATCCGCCGCATCGGTGCGATCAAGAAGGGCGACGAGATCATCGGC
AACCAGACCAAGATCAAGGTCGTCAAGAACAAGATGGCGCCGCCGTTCAAGCAGGTCATCACCGAGATCCTGTACGGCCA
GGGCATCTCCCGCGAGGGCGAGCTGATCGACATGGGCGTGGAGGCCAAGCTGGTGCAGAAGGCGGGCGCCTGGTACAGCA
TGGGCGAGGAGCGGATCGGCCAGGGCAAGGAGAACGCCCGGCAGTACCTCAAGGAGAACCCCGCGGTCGCCCAGCGGCTC
GAGGCGGAACTGCGCGAGAAGTTCGTGCCCGCCGAGGCCCGCCCGGGTGAGGACGACGACCGCGATGAAGCCGATGCCTG
A

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

69.452

100

0.697
  recA Pseudomonas stutzeri DSM 10701

71.471

96.243

0.688
  recA Acinetobacter baumannii D1279779

71.429

95.087

0.679
  recA Vibrio cholerae strain A1552

69.88

95.954

0.671
  recA Vibrio cholerae O1 biovar El Tor strain E7946

69.88

95.954

0.671
  recA Ralstonia pseudosolanacearum GMI1000

73.802

90.462

0.668
  recA Glaesserella parasuis strain SC1401

64.451

100

0.645
  recA Neisseria gonorrhoeae MS11

67.791

94.22

0.639
  recA Neisseria gonorrhoeae MS11

67.791

94.22

0.639
  recA Neisseria gonorrhoeae strain FA1090

67.791

94.22

0.639
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.224

99.133

0.607
  recA Latilactobacillus sakei subsp. sakei 23K

60.35

99.133

0.598
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.562

96.243

0.592
  recA Bacillus subtilis subsp. subtilis str. 168

62.769

93.931

0.59
  recA Streptococcus mitis NCTC 12261

58.14

99.422

0.578
  recA Helicobacter pylori strain NCTC11637

60.976

94.798

0.578
  recA Streptococcus mitis SK321

58.309

99.133

0.578
  recA Helicobacter pylori 26695

60.671

94.798

0.575
  recA Streptococcus pneumoniae D39

60.671

94.798

0.575
  recA Streptococcus pneumoniae R6

60.671

94.798

0.575
  recA Streptococcus pneumoniae TIGR4

60.671

94.798

0.575
  recA Streptococcus pneumoniae Rx1

60.671

94.798

0.575
  recA Streptococcus mutans UA159

60.303

95.376

0.575
  recA Streptococcus pyogenes NZ131

60

95.376

0.572
  recA Lactococcus lactis subsp. cremoris KW2

59.385

93.931

0.558
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.485

95.376

0.558

Multiple sequence alignment