Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   VTAP4600_RS00510 Genome accession   NZ_LT960611
Coordinates   96894..97934 (+) Length   346 a.a.
NCBI ID   WP_102521007.1    Uniprot ID   -
Organism   Vibrio tapetis subsp. tapetis isolate Vibrio tapetis CECT4600     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 91894..102934
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VTAP4600_RS00495 (VTAP4600_A0092) rpoS 92543..93523 (+) 981 WP_102521004.1 RNA polymerase sigma factor RpoS Regulator
  VTAP4600_RS00500 (VTAP4600_A0093) mutS 93600..96158 (-) 2559 WP_102521005.1 DNA mismatch repair protein MutS -
  VTAP4600_RS00505 (VTAP4600_A0094) pncC 96255..96761 (+) 507 WP_415239679.1 nicotinamide-nucleotide amidase -
  VTAP4600_RS00510 (VTAP4600_A0095) recA 96894..97934 (+) 1041 WP_102521007.1 recombinase RecA Machinery gene
  VTAP4600_RS00515 (VTAP4600_A0096) - 98239..98643 (+) 405 WP_102521008.1 DUF2170 family protein -
  VTAP4600_RS00520 (VTAP4600_A0097) - 98640..99326 (+) 687 WP_102521009.1 PspA/IM30 family protein -
  VTAP4600_RS00525 (VTAP4600_A0098) - 99342..100364 (+) 1023 WP_102521010.1 potassium channel protein -
  VTAP4600_RS00530 (VTAP4600_A0099) - 100364..101005 (+) 642 WP_102521011.1 YjfK family protein -
  VTAP4600_RS00535 (VTAP4600_A0100) - 101021..101434 (+) 414 WP_102521012.1 DUF350 domain-containing protein -
  VTAP4600_RS00540 (VTAP4600_A0101) - 101445..102059 (+) 615 WP_231897841.1 DUF1190 domain-containing protein -

Sequence

Protein


Download         Length: 346 a.a.        Molecular weight: 37274.76 Da        Isoelectric Point: 5.1701

>NTDB_id=1148297 VTAP4600_RS00510 WP_102521007.1 96894..97934(+) (recA) [Vibrio tapetis subsp. tapetis isolate Vibrio tapetis CECT4600]
MDDNKKKALAAALGQIEKQFGKGSIMRLGDNRTMDVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIA
AAQRVGKTCAFIDAEHALDPIYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVMVIDSVAALTPKAEIEGEMGD
SHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKDGDEIVGNE
TRIKVVKNKIAAPFKQAETQILYGQGFNRNGELIDLGVKHKLVDKAGAWYSYNGDKIGQGKANAGKYLAEHTNIALEIDS
KLREMLLTPVELDESEGEKEAPQEEL

Nucleotide


Download         Length: 1041 bp        

>NTDB_id=1148297 VTAP4600_RS00510 WP_102521007.1 96894..97934(+) (recA) [Vibrio tapetis subsp. tapetis isolate Vibrio tapetis CECT4600]
ATGGATGACAACAAGAAAAAGGCACTAGCCGCGGCGCTTGGCCAAATTGAAAAACAATTCGGCAAAGGCTCTATTATGCG
TCTTGGTGATAACCGTACAATGGATGTTGAAACCATTTCTACCGGTTCACTTTCATTAGACATCGCTTTGGGTGCTGGTG
GTTTACCTATGGGGCGTATCGTTGAAGTATACGGGCCTGAAAGTTCTGGTAAAACAACCCTGACTCTAGAGCTTATTGCA
GCCGCGCAGCGTGTAGGTAAAACATGTGCATTTATCGATGCAGAGCATGCCCTTGACCCGATTTATGCTAAAAAGCTTGG
TGTTGATATCGATGCCCTTTTGGTCTCTCAACCGGATACTGGTGAGCAAGCACTAGAAATTTGTGATGCATTAGCACGCT
CTGGCGCAATCGACGTAATGGTTATTGACTCCGTAGCAGCGTTAACGCCAAAAGCTGAAATTGAAGGCGAAATGGGCGAC
AGCCACATGGGTCTTCAAGCTCGTATGCTTTCTCAAGCCATGCGTAAGCTTACGGGTAACCTAAAGCAGTCTAACTGTAT
GTGTATCTTCATCAACCAAATCCGTATGAAGATTGGTGTGATGTTTGGTAACCCAGAAACCACAACAGGTGGTAACGCGC
TTAAGTTTTACGCTTCTGTTCGTCTTGATATCCGTCGTACGGGTTCGATTAAAGATGGCGACGAAATCGTGGGTAACGAA
ACTCGCATTAAAGTGGTTAAAAACAAAATTGCCGCACCATTTAAGCAAGCTGAAACTCAAATTCTTTATGGCCAAGGCTT
TAACCGTAATGGTGAGCTAATTGACCTAGGTGTTAAGCACAAGTTGGTTGATAAAGCCGGTGCTTGGTATAGCTACAATG
GTGACAAGATTGGTCAAGGTAAAGCGAACGCAGGTAAATATCTAGCAGAGCACACCAATATTGCCCTAGAGATTGATAGC
AAGTTACGTGAAATGCTTTTGACGCCAGTTGAGCTGGATGAGTCAGAAGGTGAGAAAGAAGCACCACAAGAAGAATTATA
A

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae O1 biovar El Tor strain E7946

89.97

95.087

0.855
  recA Vibrio cholerae strain A1552

89.97

95.087

0.855
  recA Pseudomonas stutzeri DSM 10701

72.727

98.555

0.717
  recA Acinetobacter baylyi ADP1

71.802

99.422

0.714
  recA Acinetobacter baumannii D1279779

74.39

94.798

0.705
  recA Neisseria gonorrhoeae MS11

66.286

100

0.671
  recA Neisseria gonorrhoeae MS11

66.286

100

0.671
  recA Neisseria gonorrhoeae strain FA1090

66.286

100

0.671
  recA Ralstonia pseudosolanacearum GMI1000

67.353

98.266

0.662
  recA Glaesserella parasuis strain SC1401

69.753

93.642

0.653
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

60.526

98.844

0.598
  recA Streptococcus pneumoniae D39

59.026

100

0.595
  recA Streptococcus pneumoniae TIGR4

59.026

100

0.595
  recA Streptococcus pneumoniae Rx1

59.026

100

0.595
  recA Streptococcus pneumoniae R6

59.026

100

0.595
  recA Streptococcus mutans UA159

58.501

100

0.587
  recA Helicobacter pylori 26695

60.856

94.509

0.575
  recA Streptococcus pyogenes NZ131

60.923

93.931

0.572
  recA Bacillus subtilis subsp. subtilis str. 168

61.682

92.775

0.572
  recA Helicobacter pylori strain NCTC11637

60.55

94.509

0.572
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.215

95.665

0.566
  recA Streptococcus mitis NCTC 12261

60.681

93.353

0.566
  recA Streptococcus mitis SK321

60.372

93.353

0.564
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.815

92.197

0.561
  recA Latilactobacillus sakei subsp. sakei 23K

60.436

92.775

0.561
  recA Lactococcus lactis subsp. cremoris KW2

59.752

93.353

0.558

Multiple sequence alignment