Detailed information NTG1148295

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: VTAP4600_RS00495
• Genome accession: NZ_LT960611
• Coordinates: 92543..93523 (+)
• Length: 326 a.a.
• NCBI ID: WP_102521004.1
• Uniprot ID: A0A2N8Z839
• Organism: Vibrio tapetis subsp. tapetis isolate Vibrio tapetis CECT4600
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 87543..98523

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
VTAP4600_RS00465 (VTAP4600_A0086)	ispD	87808..88530 (+)	723	WP_102520999.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
VTAP4600_RS00470 (VTAP4600_A0087)	ispF	88533..89009 (+)	477	WP_102521000.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
VTAP4600_RS00475 (VTAP4600_A0088)	truD	89014..90063 (+)	1050	WP_102521001.1	tRNA pseudouridine(13) synthase TruD	-
VTAP4600_RS00480 (VTAP4600_A0089)	surE	90076..90822 (+)	747	WP_102521002.1	5'/3'-nucleotidase SurE	-
VTAP4600_RS00485 (VTAP4600_A0090)	-	90822..91448 (+)	627	WP_102523840.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
VTAP4600_RS00490 (VTAP4600_A0091)	-	91459..92469 (+)	1011	WP_102521003.1	peptidoglycan DD-metalloendopeptidase family protein	-
VTAP4600_RS00495 (VTAP4600_A0092)	rpoS	92543..93523 (+)	981	WP_102521004.1	RNA polymerase sigma factor RpoS	Regulator
VTAP4600_RS00500 (VTAP4600_A0093)	mutS	93600..96158 (-)	2559	WP_102521005.1	DNA mismatch repair protein MutS	-
VTAP4600_RS00505 (VTAP4600_A0094)	pncC	96255..96761 (+)	507	WP_415239679.1	nicotinamide-nucleotide amidase	-
VTAP4600_RS00510 (VTAP4600_A0095)	recA	96894..97934 (+)	1041	WP_102521007.1	recombinase RecA	Machinery gene

Sequence

Protein

• Length: 326 a.a.
• Molecular weight: 37330.58 Da
• Isoelectric Point: 5.2697

>NTDB_id=1148295 VTAP4600_RS00495 WP_102521004.1 92543..93523(+) (rpoS) [Vibrio tapetis subsp. tapetis isolate Vibrio tapetis CECT4600]
MSISNAVKAEESFDINAVEKEQSPVKAASKPKSTPKQKEEFEVTAKSLDATQLYLGEIGFSPLLTAEEEVLYARRALRGD
EAARKRMIESNLRLVVKISRRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIRL
PIHVVKELNIYLRTARELSQKLDHEPTAEEIAHKLDKPVEDVSKMLRLNERVSSVDTPIGGESEKALLDIIPDIHNSDPE
VCTQDDDIKSSLIDWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILIKQGLNMESL
FNVEND

Nucleotide

• Length: 981 bp

>NTDB_id=1148295 VTAP4600_RS00495 WP_102521004.1 92543..93523(+) (rpoS) [Vibrio tapetis subsp. tapetis isolate Vibrio tapetis CECT4600]
ATGAGTATCAGCAATGCAGTAAAAGCCGAAGAATCGTTTGATATTAATGCAGTTGAGAAGGAACAATCACCTGTAAAAGC
AGCTTCGAAGCCAAAAAGCACACCTAAGCAAAAAGAAGAATTTGAAGTAACAGCAAAAAGCTTAGATGCCACTCAACTAT
ATCTTGGAGAAATTGGTTTTTCACCGCTCCTAACCGCCGAAGAAGAAGTTCTATATGCTCGTCGTGCCCTGCGTGGTGAC
GAAGCAGCTCGCAAACGTATGATCGAAAGTAATTTACGTTTGGTTGTTAAAATATCTCGCCGTTACGGCAATCGTGGTTT
GGCGCTCTTGGATCTGATTGAAGAAGGTAACCTCGGGTTGATCCGTGCGGTTGAAAAGTTCGATCCTGAACGTGGTTTCC
GTTTCTCTACTTACGCAACTTGGTGGATTCGCCAAACGATTGAACGTGCGTTGATGAACCAAACTCGCACCATTCGTTTA
CCTATTCATGTTGTGAAAGAACTAAACATCTACTTACGAACAGCACGTGAGCTCTCTCAGAAACTTGATCATGAGCCAAC
AGCAGAAGAAATCGCGCACAAACTGGATAAACCTGTAGAAGATGTCAGTAAAATGCTTCGTCTCAATGAGCGTGTGAGTT
CTGTCGATACACCGATTGGTGGTGAAAGCGAAAAAGCACTACTGGATATCATCCCTGATATACACAATTCTGATCCGGAA
GTGTGCACCCAAGATGACGACATCAAGTCTTCACTCATTGATTGGCTAGACGAGCTAAATCCAAAGCAAAAAGAAGTGCT
CGCACGCCGATTTGGTTTGCTGGGTTATGAGCCTTCAACATTGGAAGAGGTGGGACGAGAAATTAACCTGACGCGTGAAC
GCGTTCGTCAAATTCAAGTAGAAGGCTTACGTCGCCTAAGAGAGATCCTGATTAAGCAAGGCCTTAATATGGAATCACTT
TTTAATGTAGAAAATGATTAG

Domains

Predicted by InterproScan.

• Sigma-70, region 4 (Sigma70_r4) (255-308)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (49-82)

• Sigma-70 region 2 (Sigma70_r2) (87-156)

• Sigma-70 region 3 (Sigma70_r3) (167-240)

3D structure

• AlphaFold DB: A0A2N8Z839

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	80.838	100	0.828