Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   CKV83_RS09415 Genome accession   NZ_LT906439
Coordinates   2006843..2007985 (+) Length   380 a.a.
NCBI ID   WP_018374052.1    Uniprot ID   -
Organism   Streptococcus merionis strain NCTC13788     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2001843..2012985
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CKV83_RS09390 (SAMEA4412692_01874) - 2002117..2002977 (-) 861 WP_018374057.1 helix-turn-helix domain-containing protein -
  CKV83_RS09395 (SAMEA4412692_01875) - 2003067..2003963 (+) 897 WP_018374056.1 ATP-binding cassette domain-containing protein -
  CKV83_RS09400 (SAMEA4412692_01876) - 2003950..2004645 (+) 696 WP_018374055.1 ABC transporter permease -
  CKV83_RS11630 - 2004787..2005254 (-) 468 Protein_1805 recombinase family protein -
  CKV83_RS11810 - 2005300..2005443 (-) 144 Protein_1806 replication protein RepR -
  CKV83_RS09410 (SAMEA4412692_01877) cinA 2005533..2006795 (+) 1263 WP_018374053.1 competence/damage-inducible protein A Machinery gene
  CKV83_RS09415 (SAMEA4412692_01878) recA 2006843..2007985 (+) 1143 WP_018374052.1 recombinase RecA Machinery gene
  CKV83_RS09420 (SAMEA4412692_01879) spx 2008068..2008466 (+) 399 WP_018374051.1 transcriptional regulator Spx -
  CKV83_RS09425 (SAMEA4412692_01880) treC 2008870..2010504 (-) 1635 WP_018374050.1 alpha,alpha-phosphotrehalase -
  CKV83_RS09430 (SAMEA4412692_01881) treP 2010983..2012458 (-) 1476 Protein_1811 PTS system trehalose-specific EIIBC component -

Sequence

Protein


Download         Length: 380 a.a.        Molecular weight: 41052.91 Da        Isoelectric Point: 4.9036

>NTDB_id=1147151 CKV83_RS09415 WP_018374052.1 2006843..2007985(+) (recA) [Streptococcus merionis strain NCTC13788]
MAKKPAKNLNEITKKFGDERKKALDDALKTIEKDFGKGAIMRLGERVEQKVQVMSSGSLALDIALGAGGYPKGRIVEIYG
PESSGKTTVALHAVAQCQKDGGIAAFIDAEHALDPLYAQALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVIDSV
AALVPRAEIDGDIGDNHVGLQARMMSQAMRKLGASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYSSVRLDVR
GTTQIKGTGDQKDQNVGKETKIKVVKNKVAPPFKEAFVEIMYGEGISQTGELVKIASDLDIIKKSGAWFSYEGEKIGQGS
ENAKKFLKENPEVFAEIDKKVRIHYGLIEGEEVPENTPVQDEAPVSEEMTLELDAIEIEE

Nucleotide


Download         Length: 1143 bp        

>NTDB_id=1147151 CKV83_RS09415 WP_018374052.1 2006843..2007985(+) (recA) [Streptococcus merionis strain NCTC13788]
TTGGCAAAAAAACCAGCAAAAAATTTAAACGAAATTACTAAGAAATTTGGAGATGAGCGCAAAAAAGCTCTTGATGATGC
CTTGAAAACCATTGAAAAAGACTTTGGTAAAGGTGCGATTATGCGTCTAGGTGAGCGCGTGGAGCAAAAGGTTCAGGTCA
TGAGTTCAGGCTCGCTTGCGCTTGATATTGCCCTAGGTGCAGGTGGGTATCCTAAAGGCCGTATCGTCGAAATCTACGGA
CCAGAATCGTCTGGTAAAACTACCGTTGCCCTTCATGCTGTCGCCCAGTGTCAAAAAGATGGAGGGATTGCAGCTTTTAT
TGATGCTGAGCATGCCCTTGATCCCCTTTACGCGCAAGCTCTTGGAGTTAACATTGATGAGCTTCTCTTGTCACAGCCAG
ACTCTGGTGAGCAAGGCCTTGAAATCGCTGGCAAATTGATCGACTCAGGAGCGGTGGATCTGGTGGTTATTGACTCAGTT
GCAGCCCTTGTGCCACGTGCTGAAATAGACGGAGACATCGGTGATAACCACGTAGGTCTGCAAGCCCGCATGATGAGTCA
GGCTATGCGTAAGCTCGGTGCCTCTATCAACAAGACTAAGACTATCGCCATCTTTATCAACCAATTGCGTGAAAAAGTAG
GCGTCATGTTTGGTAATCCAGAGACAACTCCTGGTGGGCGTGCCCTTAAGTTCTACTCATCTGTCCGTCTAGATGTTCGC
GGAACGACTCAAATCAAGGGGACAGGTGACCAGAAAGATCAGAATGTCGGTAAAGAAACCAAGATCAAGGTCGTGAAAAA
TAAGGTTGCTCCGCCATTTAAAGAAGCTTTCGTGGAAATCATGTATGGCGAGGGGATTTCTCAAACTGGTGAATTGGTGA
AGATTGCGAGTGATCTTGACATCATCAAAAAATCTGGCGCTTGGTTCTCTTACGAAGGTGAAAAAATCGGCCAGGGTTCT
GAAAATGCTAAGAAGTTCCTCAAAGAAAATCCGGAGGTTTTTGCCGAAATTGACAAAAAAGTTCGAATTCATTATGGCTT
GATTGAAGGTGAAGAAGTGCCTGAAAACACGCCAGTACAGGATGAAGCGCCTGTTTCTGAAGAGATGACGCTGGAGTTGG
ATGCGATTGAAATCGAAGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(22-287)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Streptococcus mitis SK321

85.677

100

0.866
  recA Streptococcus mitis NCTC 12261

85.417

100

0.863
  recA Streptococcus pneumoniae D39

84.496

100

0.861
  recA Streptococcus pneumoniae R6

84.496

100

0.861
  recA Streptococcus pneumoniae TIGR4

84.496

100

0.861
  recA Streptococcus pneumoniae Rx1

84.496

100

0.861
  recA Streptococcus mutans UA159

83.854

100

0.847
  recA Streptococcus pyogenes NZ131

83.727

100

0.839
  recA Lactococcus lactis subsp. cremoris KW2

77.401

93.158

0.721
  recA Latilactobacillus sakei subsp. sakei 23K

69.527

88.947

0.618
  recA Bacillus subtilis subsp. subtilis str. 168

69.605

86.579

0.603
  recA Neisseria gonorrhoeae MS11

62.84

87.105

0.547
  recA Neisseria gonorrhoeae MS11

62.84

87.105

0.547
  recA Neisseria gonorrhoeae strain FA1090

62.84

87.105

0.547
  recA Glaesserella parasuis strain SC1401

60.997

89.737

0.547
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.117

89.737

0.539
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.702

86.579

0.534
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.846

85.526

0.529
  recA Vibrio cholerae strain A1552

61.846

85.526

0.529
  recA Acinetobacter baumannii D1279779

61.656

85.789

0.529
  recA Acinetobacter baylyi ADP1

61.231

85.526

0.524
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

59.581

87.895

0.524
  recA Helicobacter pylori strain NCTC11637

56.41

92.368

0.521
  recA Helicobacter pylori 26695

56.41

92.368

0.521
  recA Ralstonia pseudosolanacearum GMI1000

61.199

83.421

0.511
  recA Pseudomonas stutzeri DSM 10701

58.769

85.526

0.503

Multiple sequence alignment