Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   DABAL43B_RS11525 Genome accession   NZ_LT799838
Coordinates   2709716..2710774 (+) Length   352 a.a.
NCBI ID   WP_079692513.1    Uniprot ID   A0A229GSS9
Organism   Psychrobacter sp. DAB_AL43B     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2704716..2715774
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DABAL43B_RS11510 (DABAL43B_2307) - 2706199..2707128 (-) 930 WP_079692506.1 DUF2628 domain-containing protein -
  DABAL43B_RS11515 (DABAL43B_2308) - 2707325..2707759 (+) 435 WP_079692509.1 hypothetical protein -
  DABAL43B_RS11520 (DABAL43B_2309) trmB 2707949..2708677 (+) 729 WP_264753856.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  DABAL43B_RS11525 (DABAL43B_2310) recA 2709716..2710774 (+) 1059 WP_079692513.1 recombinase RecA Machinery gene
  DABAL43B_RS11530 (DABAL43B_2311) - 2710815..2711930 (+) 1116 WP_079692515.1 regulatory protein RecX -
  DABAL43B_RS11535 (DABAL43B_2312) - 2711985..2713442 (-) 1458 WP_079692517.1 anion permease -
  DABAL43B_RS11540 (DABAL43B_2313) - 2713724..2714467 (-) 744 WP_079692518.1 YidB family protein -
  DABAL43B_RS11545 (DABAL43B_2314) - 2714707..2715165 (-) 459 WP_079692519.1 hypothetical protein -
  DABAL43B_RS11550 (DABAL43B_2315) - 2715293..2715574 (-) 282 WP_079692521.1 succinate dehydrogenase assembly factor 2 -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37764.22 Da        Isoelectric Point: 4.8142

>NTDB_id=1146237 DABAL43B_RS11525 WP_079692513.1 2709716..2710774(+) (recA) [Psychrobacter sp. DAB_AL43B]
MDENKAKALKAALAQIEKQFGKNTIMHLGDDSAALDVDVVSTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTMTLQAI
AECQKQGGVCAFIDAEHALDPVYARKLGVNTDELLLSQPDNGEQALEITDMLVRSGAIDMIVIDSVAALTPRAEIEGEMG
DSHMGLQARLMSQALRKITGNAKRSNCMVVFINQIRMKIGVMFGSPETTTGGNALKFYASVRMDIRRIGAVKNGDEIIGN
QTRVKVIKNKMAPPFRQAEFEITYGEGTNHLAEVIDLGVEIGAVGKAGSWYSYGDEKIGQGKANSVLFLKENPVIAEEIE
AKIRAEKLGVKSDSKAEDLIEANEELASEPVQ

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=1146237 DABAL43B_RS11525 WP_079692513.1 2709716..2710774(+) (recA) [Psychrobacter sp. DAB_AL43B]
ATGGACGAAAATAAAGCCAAAGCCCTTAAAGCTGCATTAGCTCAAATCGAAAAGCAGTTTGGTAAAAATACCATTATGCA
TTTGGGTGATGACTCAGCAGCACTTGATGTCGATGTGGTATCGACTGGCTCATTAGGTTTAGATATTGCACTTGGTATTG
GCGGTTTGCCAAAAGGTCGTATCGTTGAGATTTACGGCCCTGAAAGCTCAGGTAAAACGACTATGACTTTGCAGGCGATT
GCAGAGTGCCAAAAACAAGGTGGTGTTTGTGCCTTCATCGATGCTGAGCACGCCTTAGATCCAGTATATGCACGCAAGCT
TGGTGTGAATACTGATGAATTACTACTCTCACAGCCTGATAATGGCGAGCAAGCGCTTGAGATTACCGATATGTTGGTAC
GTTCAGGTGCAATCGACATGATCGTTATTGACTCAGTAGCAGCTTTGACGCCGCGTGCAGAGATTGAGGGCGAGATGGGC
GATTCACATATGGGTTTGCAAGCACGTCTTATGAGCCAAGCCCTACGTAAAATCACCGGTAATGCCAAACGCTCAAACTG
TATGGTAGTGTTTATTAACCAAATTCGTATGAAAATCGGTGTTATGTTTGGTAGCCCAGAAACCACAACCGGTGGTAATG
CGCTCAAATTCTATGCTTCAGTACGTATGGACATTCGTCGTATCGGTGCGGTCAAAAATGGCGATGAAATCATTGGTAAC
CAAACCCGTGTCAAAGTCATTAAAAACAAAATGGCACCACCATTTCGCCAAGCTGAGTTTGAGATTACTTATGGCGAAGG
TACCAATCACTTAGCGGAAGTCATTGATTTGGGTGTTGAGATTGGTGCGGTTGGAAAAGCAGGCTCGTGGTACAGCTATG
GCGATGAAAAAATCGGTCAAGGTAAAGCCAACTCAGTACTGTTCTTAAAAGAAAACCCTGTTATTGCTGAAGAGATTGAA
GCTAAGATTCGTGCTGAAAAGCTTGGTGTAAAAAGTGACAGCAAGGCAGAAGATCTTATTGAAGCTAATGAAGAACTGGC
CTCTGAACCTGTACAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A229GSS9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

76

99.432

0.756
  recA Acinetobacter baumannii D1279779

75.942

98.011

0.744
  recA Pseudomonas stutzeri DSM 10701

70.977

98.864

0.702
  recA Glaesserella parasuis strain SC1401

72.671

91.477

0.665
  recA Vibrio cholerae strain A1552

71.914

92.045

0.662
  recA Vibrio cholerae O1 biovar El Tor strain E7946

71.914

92.045

0.662
  recA Neisseria gonorrhoeae strain FA1090

71.077

92.33

0.656
  recA Neisseria gonorrhoeae MS11

71.077

92.33

0.656
  recA Neisseria gonorrhoeae MS11

71.077

92.33

0.656
  recA Ralstonia pseudosolanacearum GMI1000

71.429

89.489

0.639
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.846

92.33

0.608
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.388

95.17

0.594
  recA Helicobacter pylori strain NCTC11637

63.692

92.33

0.588
  recA Helicobacter pylori 26695

63.385

92.33

0.585
  recA Bacillus subtilis subsp. subtilis str. 168

63.551

91.193

0.58
  recA Latilactobacillus sakei subsp. sakei 23K

58.721

97.727

0.574
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.111

92.045

0.562
  recA Streptococcus mutans UA159

57.353

96.591

0.554
  recA Streptococcus pneumoniae D39

58.485

93.75

0.548
  recA Streptococcus pneumoniae Rx1

58.485

93.75

0.548
  recA Streptococcus pneumoniae R6

58.485

93.75

0.548
  recA Streptococcus pneumoniae TIGR4

58.485

93.75

0.548
  recA Streptococcus mitis NCTC 12261

58.589

92.614

0.543
  recA Lactococcus lactis subsp. cremoris KW2

58.824

91.761

0.54
  recA Streptococcus mitis SK321

58.282

92.614

0.54
  recA Streptococcus pyogenes NZ131

57.362

92.614

0.531

Multiple sequence alignment