Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   BQ5903_RS07750 Genome accession   NZ_LT630287
Coordinates   1670192..1671292 (-) Length   366 a.a.
NCBI ID   WP_079579666.1    Uniprot ID   -
Organism   Ligilactobacillus acidipiscis strain ACA-DC 1533     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1665192..1676292
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BQ5903_RS07740 (LAC1533_1538) - 1667253..1668053 (-) 801 WP_079579286.1 TIGR00282 family metallophosphoesterase -
  BQ5903_RS07745 (LAC1533_1539) rny 1668342..1669907 (-) 1566 WP_331199988.1 ribonuclease Y -
  BQ5903_RS07750 (LAC1533_1540) recA 1670192..1671292 (-) 1101 WP_079579666.1 recombinase RecA Machinery gene
  BQ5903_RS07755 (LAC1533_1541) cinA 1671405..1672649 (-) 1245 WP_056988046.1 competence/damage-inducible protein A Machinery gene
  BQ5903_RS07760 (LAC1533_1542) pgsA 1672838..1673425 (-) 588 WP_079579288.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  BQ5903_RS07765 (LAC1533_1543) - 1673444..1674475 (-) 1032 WP_079579289.1 RodZ domain-containing protein -
  BQ5903_RS07770 (LAC1533_1544) ymfI 1674564..1675289 (-) 726 WP_079579290.1 elongation factor P 5-aminopentanone reductase -

Sequence

Protein


Download         Length: 366 a.a.        Molecular weight: 39415.82 Da        Isoelectric Point: 5.8629

>NTDB_id=1145451 BQ5903_RS07750 WP_079579666.1 1670192..1671292(-) (recA) [Ligilactobacillus acidipiscis strain ACA-DC 1533]
MADERQAALDAALKKIEKNFGKGSIMRMGDKADTQISTIPSGSLALDEALGVGGYPRGRIVEIYGPESSGKTTVALHAVA
EVQAQGGTAAYIDAENALDPVYASALGVNIDELLLSQPDTGEQGLEIADALVSSGAVDIVVVDSVAALVPRAEIEGEMGD
AHVGLQARLMSQALRKLSGTINKTKTIALFINQIREKVGVMFGNPETTPGGRALKFYATIRLEIRRAEQIKDGSDIVGNR
VRIKVVKNKVAPPFRKAEVDIMYGEGISKTGELIDMAVEKDIVHKSGSWFSYGEERIGQGRENAKKYMADHPEMMNEVTT
KVRQAYGIADENSDNAKEAGQKDQLDLDLKNNAKETKKESKKAAKK

Nucleotide


Download         Length: 1101 bp        

>NTDB_id=1145451 BQ5903_RS07750 WP_079579666.1 1670192..1671292(-) (recA) [Ligilactobacillus acidipiscis strain ACA-DC 1533]
GTGGCTGATGAAAGACAAGCAGCATTAGACGCTGCATTAAAAAAGATTGAAAAAAATTTCGGTAAAGGTTCAATTATGCG
GATGGGCGATAAGGCCGACACGCAGATCTCGACGATCCCAAGTGGTTCATTGGCTTTAGATGAAGCTTTGGGGGTAGGAG
GTTACCCGCGGGGACGGATCGTTGAGATCTACGGTCCAGAAAGTTCTGGTAAAACAACGGTTGCTTTGCATGCTGTCGCT
GAAGTACAAGCTCAAGGAGGCACTGCTGCTTATATCGATGCCGAGAACGCTTTGGATCCGGTCTATGCGAGTGCTCTTGG
AGTCAACATTGATGAGCTTTTGCTTTCACAGCCCGATACTGGTGAACAGGGCTTGGAAATCGCCGATGCCTTAGTTTCTT
CAGGTGCTGTAGATATAGTTGTTGTTGATTCTGTAGCGGCTTTAGTTCCACGAGCTGAAATAGAAGGTGAAATGGGTGAC
GCGCATGTTGGTTTGCAAGCTCGCCTAATGTCACAAGCTTTAAGGAAGCTTTCAGGTACGATCAATAAAACAAAGACGAT
TGCGCTTTTTATTAATCAGATCCGTGAAAAAGTTGGTGTGATGTTTGGTAATCCTGAAACAACACCAGGCGGACGAGCTT
TGAAATTTTATGCTACGATCCGTTTGGAGATCAGACGTGCCGAACAGATCAAAGACGGTTCTGACATCGTCGGGAATCGC
GTGCGGATCAAGGTCGTTAAAAATAAAGTTGCTCCGCCATTCAGGAAAGCCGAAGTTGACATTATGTATGGCGAAGGTAT
ATCTAAGACCGGAGAGCTGATCGATATGGCTGTTGAAAAAGACATCGTGCATAAAAGCGGTTCGTGGTTCTCGTATGGTG
AAGAACGAATCGGTCAAGGGCGTGAAAATGCCAAGAAGTATATGGCTGATCACCCTGAAATGATGAACGAAGTTACAACT
AAAGTTCGTCAAGCATACGGGATCGCCGATGAAAATAGTGACAACGCTAAAGAAGCAGGGCAAAAAGATCAGTTAGATCT
TGATTTAAAAAATAATGCCAAAGAAACAAAAAAAGAATCTAAAAAAGCTGCTAAAAAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

87.5

89.617

0.784
  recA Bacillus subtilis subsp. subtilis str. 168

77.439

89.617

0.694
  recA Streptococcus mitis NCTC 12261

67.507

97.541

0.658
  recA Streptococcus pyogenes NZ131

66.76

97.814

0.653
  recA Streptococcus pneumoniae R6

66.952

95.902

0.642
  recA Streptococcus pneumoniae Rx1

66.952

95.902

0.642
  recA Streptococcus pneumoniae D39

66.952

95.902

0.642
  recA Streptococcus pneumoniae TIGR4

66.952

95.902

0.642
  recA Streptococcus mitis SK321

70.091

90.437

0.634
  recA Streptococcus mutans UA159

65.429

95.628

0.626
  recA Lactococcus lactis subsp. cremoris KW2

67.868

90.984

0.617
  recA Neisseria gonorrhoeae strain FA1090

62.918

89.891

0.566
  recA Neisseria gonorrhoeae MS11

62.918

89.891

0.566
  recA Neisseria gonorrhoeae MS11

62.918

89.891

0.566
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.195

89.617

0.557
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.346

88.525

0.552
  recA Vibrio cholerae strain A1552

62.346

88.525

0.552
  recA Ralstonia pseudosolanacearum GMI1000

64.537

85.519

0.552
  recA Pseudomonas stutzeri DSM 10701

60.06

90.984

0.546
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.231

88.798

0.544
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

60.486

89.891

0.544
  recA Glaesserella parasuis strain SC1401

61.059

87.705

0.536
  recA Helicobacter pylori 26695

58.182

90.164

0.525
  recA Helicobacter pylori strain NCTC11637

58.182

90.164

0.525
  recA Acinetobacter baylyi ADP1

59.259

88.525

0.525
  recA Acinetobacter baumannii D1279779

58.642

88.525

0.519

Multiple sequence alignment