Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   BQ5903_RS07755 Genome accession   NZ_LT630287
Coordinates   1671405..1672649 (-) Length   414 a.a.
NCBI ID   WP_056988046.1    Uniprot ID   A0A0R2KJM6
Organism   Ligilactobacillus acidipiscis strain ACA-DC 1533     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1666405..1677649
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BQ5903_RS07740 (LAC1533_1538) - 1667253..1668053 (-) 801 WP_079579286.1 TIGR00282 family metallophosphoesterase -
  BQ5903_RS07745 (LAC1533_1539) rny 1668342..1669907 (-) 1566 WP_331199988.1 ribonuclease Y -
  BQ5903_RS07750 (LAC1533_1540) recA 1670192..1671292 (-) 1101 WP_079579666.1 recombinase RecA Machinery gene
  BQ5903_RS07755 (LAC1533_1541) cinA 1671405..1672649 (-) 1245 WP_056988046.1 competence/damage-inducible protein A Machinery gene
  BQ5903_RS07760 (LAC1533_1542) pgsA 1672838..1673425 (-) 588 WP_079579288.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  BQ5903_RS07765 (LAC1533_1543) - 1673444..1674475 (-) 1032 WP_079579289.1 RodZ domain-containing protein -
  BQ5903_RS07770 (LAC1533_1544) ymfI 1674564..1675289 (-) 726 WP_079579290.1 elongation factor P 5-aminopentanone reductase -
  BQ5903_RS07775 (LAC1533_1545) yfmH 1675331..1676638 (-) 1308 WP_154022027.1 EF-P 5-aminopentanol modification-associated protein YfmH -

Sequence

Protein


Download         Length: 414 a.a.        Molecular weight: 44996.39 Da        Isoelectric Point: 6.0104

>NTDB_id=1145452 BQ5903_RS07755 WP_056988046.1 1671405..1672649(-) (cinA) [Ligilactobacillus acidipiscis strain ACA-DC 1533]
MHAEVIAVGTEMLLGEITDTNSQVISEGLADLGINVYYHSLVGDNEARMTEVVKLAASRSDLVVISGGLGPTADDLTKQV
VARYLKRDLVVDKAAMHKITAFFKKRKREMTPNNKIQAMYVQGALSLPNEVGLAVGNYYQDPNGADFLLLPGPPHEMQSM
FEKTAKPLLAKQYQGQQVLNSRLLRFFGIGESNLVTKLADLIDEQANPTIAPYAKENEVTLRLTAAGHSDAEDARLLDEL
EEKITDRVGEYLYGYGENNSLPAVVVNKLRQRKLTLSASESLTGGSFQAAVTAIPGASEIFPGGFVTYAAEQKEKLLGIP
ADLIEKNGVVSRKTAIAMAENTRDLLQTDFTVSFTGAAGPDPLEGKPAGTVWIGLAGKNMVTQAKLYHFQYDRQRVRNSA
VMTGFGMLNKALDK

Nucleotide


Download         Length: 1245 bp        

>NTDB_id=1145452 BQ5903_RS07755 WP_056988046.1 1671405..1672649(-) (cinA) [Ligilactobacillus acidipiscis strain ACA-DC 1533]
ATGCACGCAGAAGTTATTGCTGTTGGGACCGAAATGCTTTTAGGTGAGATCACTGATACAAATTCTCAAGTTATCAGTGA
AGGACTGGCAGATTTAGGGATCAATGTTTATTATCACAGTTTAGTGGGTGACAATGAGGCCCGGATGACGGAAGTTGTTA
AGTTAGCAGCTTCGCGGAGTGATCTTGTCGTCATTTCTGGGGGCCTTGGACCTACCGCAGATGATTTAACTAAACAGGTA
GTTGCTCGCTATTTGAAGCGTGACTTGGTCGTCGATAAAGCGGCCATGCACAAAATCACGGCTTTTTTTAAAAAAAGAAA
ACGCGAGATGACACCAAATAACAAGATACAGGCGATGTATGTTCAAGGAGCACTTTCGCTGCCAAATGAGGTCGGGTTGG
CCGTTGGTAATTATTATCAAGATCCAAATGGTGCCGATTTCTTATTATTGCCAGGTCCGCCTCATGAGATGCAGTCGATG
TTTGAAAAAACGGCCAAGCCCTTGCTGGCCAAACAGTATCAAGGACAGCAAGTGTTGAACTCACGACTGCTGCGGTTTTT
TGGCATTGGCGAGTCCAACTTAGTTACTAAGCTGGCCGATCTGATCGATGAACAGGCCAATCCAACGATCGCACCTTATG
CCAAGGAAAATGAAGTGACCTTGCGTTTGACCGCTGCTGGGCATTCAGATGCTGAAGATGCAAGGTTGTTGGATGAATTA
GAAGAAAAGATCACTGATCGTGTGGGTGAATATCTTTATGGTTATGGTGAAAACAACAGTTTGCCAGCAGTAGTCGTCAA
TAAACTACGGCAACGCAAATTGACCTTATCTGCATCTGAAAGTTTGACAGGCGGGAGTTTTCAAGCTGCTGTCACGGCGA
TCCCAGGTGCATCTGAGATCTTTCCAGGCGGCTTTGTGACTTACGCTGCTGAACAAAAAGAAAAATTACTGGGGATACCT
GCTGATTTGATTGAAAAAAATGGTGTTGTCAGTCGAAAAACAGCGATCGCGATGGCTGAAAATACTCGCGATCTGCTTCA
GACGGATTTTACTGTTTCATTTACTGGTGCGGCTGGTCCTGATCCGTTGGAAGGCAAACCTGCCGGGACCGTTTGGATCG
GTTTAGCTGGCAAAAATATGGTAACCCAGGCAAAGCTTTATCATTTCCAGTATGATCGGCAACGGGTCCGCAACAGTGCA
GTTATGACTGGTTTTGGAATGTTGAATAAGGCATTGGATAAATAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(181-254)

Competence-damaged protein (CinA)

(259-411)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0R2KJM6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis SK321

50

100

0.507
  cinA Streptococcus mitis NCTC 12261

49.762

100

0.505
  cinA Streptococcus mutans UA159

50.361

100

0.505
  cinA Streptococcus pneumoniae TIGR4

49.524

100

0.502
  cinA Streptococcus pneumoniae Rx1

49.286

100

0.5
  cinA Streptococcus pneumoniae R6

49.286

100

0.5
  cinA Streptococcus pneumoniae D39

49.048

100

0.498
  cinA Bacillus subtilis subsp. subtilis str. 168

44.203

100

0.442
  cinA Streptococcus suis isolate S10

43.392

96.86

0.42

Multiple sequence alignment