Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   CBM981_RS08465 Genome accession   NZ_LT578417
Coordinates   1640688..1641896 (-) Length   402 a.a.
NCBI ID   WP_087068047.1    Uniprot ID   -
Organism   Cyanobium sp. NIES-981     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1635688..1646896
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CBM981_RS08440 (CBM981_1842) crtD 1635951..1637492 (+) 1542 WP_087068042.1 C-3',4' desaturase CrtD -
  CBM981_RS08445 (CBM981_1843) - 1637455..1638333 (-) 879 WP_225867317.1 prephenate/arogenate dehydrogenase -
  CBM981_RS08450 (CBM981_1844) - 1638412..1639890 (+) 1479 WP_087068044.1 helicase -
  CBM981_RS08455 (CBM981_1845) - 1639938..1640180 (+) 243 WP_087068045.1 DUF2839 domain-containing protein -
  CBM981_RS08460 (CBM981_1846) - 1640272..1640622 (+) 351 WP_087068046.1 DUF1815 family protein -
  CBM981_RS08465 (CBM981_1847) recA 1640688..1641896 (-) 1209 WP_087068047.1 recombinase RecA Machinery gene
  CBM981_RS08470 (CBM981_1848) - 1642015..1642776 (-) 762 WP_087068048.1 HAD family hydrolase -
  CBM981_RS08480 (CBM981_1849) - 1643034..1644713 (-) 1680 WP_087068049.1 AAA family ATPase -
  CBM981_RS08485 (CBM981_1850) - 1644728..1645765 (-) 1038 WP_087068050.1 LdpA C-terminal domain-containing domain -
  CBM981_RS08490 (CBM981_1851) - 1645806..1646270 (-) 465 WP_087068051.1 NAD(P)H-quinone oxidoreductase subunit N -

Sequence

Protein


Download         Length: 402 a.a.        Molecular weight: 41841.47 Da        Isoelectric Point: 5.9858

>NTDB_id=1143940 CBM981_RS08465 WP_087068047.1 1640688..1641896(-) (recA) [Cyanobium sp. NIES-981]
MPADSKAASFATTGAAASSSADARAAAERDKALGLVLNQIERNFGKGSIMRLGDASRMRVETISTGALTLDLALGGGYPK
GRVVEVYGPESSGKTTLTLHAIAEVQKRGGVAAFVDAEHALDPVYAAALGVDIENLLVSQPDTGEMALEIVDQLVRSAAV
DIVVVDSVAALTPRAEIEGEMGDLAVGSQARLMSQAMRKITGNIGKSGCTVIFLNQLRQKIGVTYGSPETTTGGNALKFY
ASVRLDIRRIQTLKRGTEEYGIRAKVKVAKNKVAPPFRIAEFDILFGRGISTLGCLLDLAEETGVVIRKGAWYSYEGDNI
GQGRDNTITWLEQNPEQAAEIEQRTRRKLTEGSEVTANSMKPLAAAAKASASTASAVEGSGMAAASGGDAGASPAGALPV
AG

Nucleotide


Download         Length: 1209 bp        

>NTDB_id=1143940 CBM981_RS08465 WP_087068047.1 1640688..1641896(-) (recA) [Cyanobium sp. NIES-981]
ATGCCTGCTGATTCCAAGGCCGCTTCCTTCGCCACGACCGGTGCCGCGGCCTCCTCTTCCGCCGATGCCCGTGCCGCGGC
GGAGCGGGACAAGGCCCTGGGCCTGGTGCTCAACCAGATCGAGCGCAACTTCGGCAAGGGCTCGATCATGCGCCTCGGCG
ATGCCTCCCGCATGCGGGTGGAAACGATCTCCACCGGTGCCCTGACCCTCGATCTGGCCCTCGGCGGCGGCTATCCCAAG
GGCCGGGTGGTGGAGGTCTACGGCCCGGAGAGTTCCGGCAAGACCACCCTCACGCTCCATGCCATCGCCGAGGTACAGAA
GCGCGGTGGCGTGGCGGCGTTCGTGGACGCTGAGCACGCCCTCGATCCCGTCTATGCGGCCGCCCTGGGGGTGGACATCG
AAAACCTGCTGGTATCCCAGCCGGATACGGGCGAAATGGCCTTGGAGATCGTCGACCAGCTGGTGCGCTCCGCCGCCGTC
GACATCGTCGTGGTCGACTCGGTGGCGGCTCTGACGCCCCGGGCCGAGATCGAGGGGGAGATGGGGGATCTGGCGGTGGG
CAGCCAGGCCCGTCTGATGAGCCAGGCCATGCGGAAGATCACCGGCAACATCGGCAAGTCCGGCTGCACCGTGATCTTCC
TGAACCAGCTGCGCCAGAAGATCGGCGTCACCTACGGCAGTCCGGAAACCACCACCGGCGGCAATGCGCTGAAGTTCTAC
GCCTCGGTGCGCCTCGACATTCGCCGCATCCAGACGCTGAAGCGCGGCACCGAGGAATACGGCATCCGCGCCAAGGTGAA
GGTGGCCAAGAACAAGGTGGCCCCCCCGTTCCGGATCGCCGAGTTCGACATCCTGTTCGGTCGGGGCATCAGCACCCTGG
GATGCCTGCTCGATCTGGCCGAGGAAACCGGTGTGGTGATCCGCAAGGGCGCCTGGTACAGCTACGAGGGCGACAACATC
GGCCAGGGCCGCGACAACACCATCACCTGGCTGGAGCAGAATCCGGAGCAAGCTGCCGAGATCGAGCAGCGCACCCGGCG
CAAGCTCACCGAAGGTTCGGAGGTGACGGCCAATTCGATGAAGCCCCTGGCTGCGGCGGCCAAGGCTTCAGCCAGCACGG
CGTCCGCCGTTGAGGGATCGGGCATGGCAGCTGCTTCCGGGGGCGATGCTGGGGCCAGCCCAGCCGGTGCTCTGCCGGTG
GCCGGATGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(31-291)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

65.861

82.338

0.542
  recA Acinetobacter baumannii D1279779

65.528

80.1

0.525
  recA Pseudomonas stutzeri DSM 10701

64.907

80.1

0.52
  recA Ralstonia pseudosolanacearum GMI1000

65.595

77.363

0.507
  recA Neisseria gonorrhoeae MS11

60.843

82.587

0.502
  recA Neisseria gonorrhoeae strain FA1090

60.843

82.587

0.502
  recA Neisseria gonorrhoeae MS11

60.843

82.587

0.502
  recA Glaesserella parasuis strain SC1401

62.229

80.348

0.5
  recA Helicobacter pylori 26695

59.172

84.08

0.498
  recA Helicobacter pylori strain NCTC11637

59.172

84.08

0.498
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.112

80.1

0.498
  recA Vibrio cholerae strain A1552

62.112

80.1

0.498
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.182

81.841

0.493
  recA Bacillus subtilis subsp. subtilis str. 168

61.371

79.851

0.49
  recA Streptococcus mitis NCTC 12261

56.447

86.816

0.49
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.3

77.861

0.485
  recA Streptococcus mitis SK321

57.101

84.08

0.48
  recA Streptococcus pneumoniae R6

56.765

84.577

0.48
  recA Streptococcus pneumoniae Rx1

56.765

84.577

0.48
  recA Streptococcus pneumoniae D39

56.765

84.577

0.48
  recA Streptococcus pneumoniae TIGR4

56.765

84.577

0.48
  recA Lactococcus lactis subsp. cremoris KW2

56.932

84.328

0.48
  recA Latilactobacillus sakei subsp. sakei 23K

59.443

80.348

0.478
  recA Streptococcus mutans UA159

57.846

80.846

0.468
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

57.944

79.851

0.463
  recA Streptococcus pyogenes NZ131

56.269

81.343

0.458

Multiple sequence alignment