Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   T479_RS05285 Genome accession   NZ_CP006837
Coordinates   1152830..1153894 (+) Length   354 a.a.
NCBI ID   WP_025218823.1    Uniprot ID   -
Organism   Lysinibacillus varians strain GY32     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1147830..1158894
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  T479_RS05260 (T479_05410) - 1148482..1148739 (+) 258 WP_024361966.1 DUF3243 domain-containing protein -
  T479_RS05265 (T479_05415) - 1148967..1149755 (+) 789 WP_024361965.1 DUF3388 domain-containing protein -
  T479_RS05270 (T479_05420) - 1149772..1150683 (+) 912 WP_174412969.1 RodZ family helix-turn-helix domain-containing protein -
  T479_RS05275 (T479_05425) pgsA 1150731..1151309 (+) 579 WP_024361963.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  T479_RS05280 (T479_05430) cinA 1151327..1152586 (+) 1260 WP_025218822.1 competence/damage-inducible protein A Machinery gene
  T479_RS05285 (T479_05435) recA 1152830..1153894 (+) 1065 WP_025218823.1 recombinase RecA Machinery gene
  T479_RS05290 (T479_05440) rny 1154349..1155908 (+) 1560 WP_024361960.1 ribonuclease Y -
  T479_RS05295 (T479_05445) - 1156234..1156932 (+) 699 WP_038509499.1 YveK family protein -
  T479_RS05300 (T479_05450) - 1156964..1157668 (+) 705 WP_024361959.1 CpsD/CapB family tyrosine-protein kinase -
  T479_RS05305 (T479_05455) - 1157700..1158464 (+) 765 WP_025218824.1 tyrosine-protein phosphatase -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 38207.49 Da        Isoelectric Point: 4.7884

>NTDB_id=114378 T479_RS05285 WP_025218823.1 1152830..1153894(+) (recA) [Lysinibacillus varians strain GY32]
MSDRKAALEQALKQIEKNFGKGSIMKLGEKTDLEIATSSSGSLALDAALGVGGYPRGRIIEVYGPESSGKTTVALHAIAE
VQAKGGQAAFIDAEHALDPIYAQKLGVNIDELLLSQPDTGEQALEIAEALVRSGAIDIIVIDSVAALVPKAEIEGDMGDS
HVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKIGVMFGNPETTPGGRALKFYSSVRLEVRRAEAIKQGNDIMGNRT
KIKIVKNKVAPPFRTAEVDIMYGEGISKEGETVDLGVELDIVQKSGSWYAYGDERLGQGRENAKQYLKENPAILEEIANK
IRSSYGMAASSYTIAAHDDEEMDEELMLLLEDDK

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=114378 T479_RS05285 WP_025218823.1 1152830..1153894(+) (recA) [Lysinibacillus varians strain GY32]
ATGAGTGATCGTAAAGCAGCCTTAGAACAGGCGTTAAAACAAATTGAAAAGAATTTCGGTAAAGGCTCTATCATGAAGCT
AGGCGAAAAAACAGATTTAGAAATTGCTACATCTTCAAGTGGTTCGCTAGCGCTTGATGCAGCATTAGGTGTTGGTGGCT
ATCCACGTGGACGTATTATTGAAGTATATGGTCCAGAATCATCAGGTAAAACGACCGTTGCGCTTCATGCGATTGCGGAA
GTACAAGCTAAGGGCGGACAAGCAGCATTTATCGATGCTGAACATGCATTAGATCCAATTTACGCTCAAAAATTAGGCGT
AAATATTGATGAACTATTACTATCTCAACCAGATACAGGTGAGCAAGCGCTTGAAATTGCAGAAGCATTAGTGCGTAGTG
GGGCGATTGATATTATCGTTATTGACTCTGTTGCAGCACTTGTACCAAAAGCTGAAATCGAAGGCGATATGGGTGATTCG
CACGTTGGTTTACAAGCTCGTTTAATGTCTCAAGCATTACGTAAGCTTTCAGGTGCGATTAATAAGTCTAAAACAATCGC
TATTTTCATTAACCAAATTCGTGAAAAAATTGGTGTTATGTTCGGAAATCCAGAAACAACTCCTGGTGGTCGTGCGCTAA
AATTCTATAGCTCAGTTCGTTTAGAAGTACGTCGTGCTGAAGCAATCAAACAAGGTAATGACATTATGGGTAACCGTACG
AAAATTAAAATTGTCAAAAATAAAGTAGCGCCACCATTCCGTACAGCTGAAGTTGATATTATGTATGGTGAAGGGATTTC
TAAAGAAGGCGAAACGGTGGATTTAGGTGTAGAATTAGACATCGTTCAAAAAAGTGGATCTTGGTATGCATATGGTGATG
AGCGTCTAGGCCAAGGACGTGAAAACGCAAAACAATATTTAAAAGAAAACCCTGCTATTTTAGAAGAAATTGCAAATAAA
ATTCGTTCTTCTTATGGCATGGCTGCATCATCTTATACCATTGCTGCACATGATGATGAGGAAATGGATGAAGAGTTAAT
GCTTCTTCTTGAAGATGACAAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

87.156

92.373

0.805
  recA Latilactobacillus sakei subsp. sakei 23K

71.225

99.153

0.706
  recA Streptococcus mitis NCTC 12261

64.266

100

0.655
  recA Streptococcus mitis SK321

63.989

100

0.653
  recA Streptococcus mutans UA159

63.889

100

0.65
  recA Streptococcus pneumoniae Rx1

68.485

93.22

0.638
  recA Streptococcus pneumoniae D39

68.485

93.22

0.638
  recA Streptococcus pneumoniae R6

68.485

93.22

0.638
  recA Streptococcus pneumoniae TIGR4

68.485

93.22

0.638
  recA Streptococcus pyogenes NZ131

67.683

92.655

0.627
  recA Lactococcus lactis subsp. cremoris KW2

66.364

93.22

0.619
  recA Neisseria gonorrhoeae strain FA1090

65.957

92.938

0.613
  recA Neisseria gonorrhoeae MS11

65.957

92.938

0.613
  recA Neisseria gonorrhoeae MS11

65.957

92.938

0.613
  recA Helicobacter pylori strain NCTC11637

62.974

96.893

0.61
  recA Acinetobacter baylyi ADP1

62.069

98.305

0.61
  recA Helicobacter pylori 26695

62.682

96.893

0.607
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.099

96.893

0.602
  recA Acinetobacter baumannii D1279779

60.745

98.588

0.599
  recA Vibrio cholerae strain A1552

61.337

97.175

0.596
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.337

97.175

0.596
  recA Glaesserella parasuis strain SC1401

60.458

98.588

0.596
  recA Ralstonia pseudosolanacearum GMI1000

63.914

92.373

0.59
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.804

92.09

0.588
  recA Pseudomonas stutzeri DSM 10701

63.24

90.678

0.573
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.539

91.243

0.571

Multiple sequence alignment