Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   T479_RS05280 Genome accession   NZ_CP006837
Coordinates   1151327..1152586 (+) Length   419 a.a.
NCBI ID   WP_025218822.1    Uniprot ID   -
Organism   Lysinibacillus varians strain GY32     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1146327..1157586
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  T479_RS05250 (T479_05400) yfmH 1146407..1147705 (+) 1299 WP_025218819.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  T479_RS05255 (T479_05405) ymfI 1147705..1148433 (+) 729 WP_025218820.1 elongation factor P 5-aminopentanone reductase -
  T479_RS05260 (T479_05410) - 1148482..1148739 (+) 258 WP_024361966.1 DUF3243 domain-containing protein -
  T479_RS05265 (T479_05415) - 1148967..1149755 (+) 789 WP_024361965.1 DUF3388 domain-containing protein -
  T479_RS05270 (T479_05420) - 1149772..1150683 (+) 912 WP_174412969.1 RodZ family helix-turn-helix domain-containing protein -
  T479_RS05275 (T479_05425) pgsA 1150731..1151309 (+) 579 WP_024361963.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  T479_RS05280 (T479_05430) cinA 1151327..1152586 (+) 1260 WP_025218822.1 competence/damage-inducible protein A Machinery gene
  T479_RS05285 (T479_05435) recA 1152830..1153894 (+) 1065 WP_025218823.1 recombinase RecA Machinery gene
  T479_RS05290 (T479_05440) rny 1154349..1155908 (+) 1560 WP_024361960.1 ribonuclease Y -
  T479_RS05295 (T479_05445) - 1156234..1156932 (+) 699 WP_038509499.1 YveK family protein -

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 45244.70 Da        Isoelectric Point: 5.0431

>NTDB_id=114377 T479_RS05280 WP_025218822.1 1151327..1152586(+) (cinA) [Lysinibacillus varians strain GY32]
MNAEILAVGSELLLGQITNTNAKFISNQLSELGINVFYHTVVGDNSKRLEEAISIAEARANLIIFSGGLGPTKDDLTKET
IARHLGVDLVFDQVALTYIEEFFAKRGRSMTDNNRKQALILAGSEVLANHHGMAPGMILTKDNCTYILLPGPPKELEPMF
QFEAKPKLGKMLNDGGVIVSHVMRFYGIGEAELEVYVQDILDTQTNPTVAPLAADGEVTLRVTAKAQSEDDAHQLIAAKV
AEIRAIVGDYQYGINDDSLASKTVEMLQDNNLTIAAAESLTAGLFQSELAEIPGVGNVLIGGLVTYTEDAKVKQLGISQQ
LLDTHGIVSSECAAAMASAVRQKFGTSIGIGLTGAAGPTAHDHQPVGTVWIGIAIDDEEPITYLLHLSGMRNTNRLRAVK
FTCHYLMQQLEARGYKKRI

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=114377 T479_RS05280 WP_025218822.1 1151327..1152586(+) (cinA) [Lysinibacillus varians strain GY32]
ATGAATGCTGAAATCCTTGCAGTTGGCTCAGAGTTATTACTTGGACAGATTACAAATACAAATGCAAAATTTATTTCAAA
TCAGCTATCTGAGTTAGGAATTAATGTGTTTTATCATACCGTTGTTGGTGACAATTCAAAACGGTTAGAAGAAGCCATTA
GCATAGCGGAAGCGCGCGCTAATCTCATTATTTTTTCAGGAGGCTTAGGTCCAACAAAGGATGATTTGACGAAGGAGACG
ATTGCTCGCCATCTTGGAGTAGACCTTGTATTCGATCAAGTTGCATTGACATATATTGAGGAGTTTTTTGCTAAACGAGG
CCGTTCAATGACGGACAATAATCGCAAGCAGGCGCTAATATTAGCAGGTAGTGAGGTGCTTGCTAATCATCATGGTATGG
CACCAGGAATGATTTTAACAAAAGATAATTGCACTTATATTTTACTTCCTGGCCCTCCAAAGGAATTAGAGCCGATGTTC
CAATTTGAAGCGAAGCCAAAGCTTGGTAAAATGCTTAATGATGGCGGAGTAATTGTGTCTCACGTAATGCGTTTTTATGG
TATTGGGGAAGCAGAGTTAGAAGTATATGTACAGGATATTTTAGATACACAAACCAATCCAACGGTTGCCCCGCTAGCAG
CTGATGGAGAGGTCACTTTACGCGTAACAGCGAAGGCCCAATCAGAGGACGACGCGCACCAGTTGATTGCTGCAAAAGTG
GCAGAAATTCGTGCTATTGTTGGCGACTATCAATATGGCATAAATGATGACTCACTCGCCTCAAAAACGGTGGAAATGTT
GCAGGACAATAATTTAACGATTGCTGCGGCAGAAAGTTTAACAGCTGGTTTATTTCAATCAGAGCTGGCTGAAATACCAG
GTGTAGGCAACGTGCTCATTGGAGGACTGGTGACCTATACCGAAGATGCGAAAGTAAAGCAGCTTGGCATTTCTCAACAA
TTACTAGATACGCATGGTATTGTGAGCAGTGAATGTGCTGCGGCAATGGCTAGTGCAGTACGTCAAAAATTTGGTACAAG
TATCGGTATCGGACTAACAGGTGCGGCTGGTCCTACAGCACATGACCATCAGCCGGTAGGAACGGTATGGATTGGTATTG
CCATAGATGACGAAGAGCCAATTACGTATTTACTTCACTTATCGGGTATGCGCAATACAAACCGATTGCGTGCCGTGAAG
TTTACTTGTCACTATTTAATGCAGCAATTGGAAGCACGAGGTTACAAGAAACGTATTTAG

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Competence-damaged protein (CinA)

(257-409)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

51.699

98.329

0.508
  cinA Streptococcus pneumoniae Rx1

45.974

91.885

0.422
  cinA Streptococcus pneumoniae TIGR4

45.974

91.885

0.422
  cinA Streptococcus pneumoniae R6

45.974

91.885

0.422
  cinA Streptococcus mitis SK321

45.953

91.408

0.42
  cinA Streptococcus pneumoniae D39

45.714

91.885

0.42
  cinA Streptococcus mitis NCTC 12261

45.17

91.408

0.413
  cinA Streptococcus mutans UA159

45.503

90.215

0.411
  cinA Streptococcus suis isolate S10

40.212

90.215

0.363

Multiple sequence alignment