Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   DQL17_RS01930 Genome accession   NZ_LS483496
Coordinates   380727..381791 (+) Length   354 a.a.
NCBI ID   WP_111688820.1    Uniprot ID   -
Organism   Haemophilus influenzae strain NCTC8455     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 375727..386791
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL17_RS01925 sxy/tfoX 379702..380355 (-) 654 WP_076773806.1 DNA transformation protein TfoX Regulator
  DQL17_RS01930 (NCTC8455_00378) recA 380727..381791 (+) 1065 WP_111688820.1 recombinase RecA Machinery gene
  DQL17_RS01935 (NCTC8455_00379) recX 381870..382328 (+) 459 WP_111688821.1 recombination regulator RecX -
  DQL17_RS01940 (NCTC8455_00380) crcB 382325..382711 (-) 387 WP_021034533.1 fluoride efflux transporter CrcB -
  DQL17_RS01945 (NCTC8455_00381) - 382711..383529 (-) 819 WP_111688822.1 Cof-type HAD-IIB family hydrolase -
  DQL17_RS01950 (NCTC8455_00382) - 383945..384949 (+) 1005 WP_105878677.1 ornithine carbamoyltransferase -
  DQL17_RS01955 (NCTC8455_00383) arcC 384959..385891 (+) 933 WP_111688823.1 carbamate kinase -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 38107.51 Da        Isoelectric Point: 4.8875

>NTDB_id=1142713 DQL17_RS01930 WP_111688820.1 380727..381791(+) (recA) [Haemophilus influenzae strain NCTC8455]
MATQEEKQKALAAALGQIEKQFGKGSIMKLGDTKTLDVESISTGSLGLDVALGIGGLPMGRIVEIFGPESSGKTTLTLSV
IAQAQKAGKTCAFIDAEHALDPIYAAKLGVDVKELFVSQPDNGEQALEICDALVRSGAIDVIIVDSVAALTPKAEIEGDM
GDSHMGLQARLMSQALRKLTGQIKNANCLVVFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRTGSVKDGENIIG
NETRVKVVKNKLAAPFRQVDFQILYGEGISKAGELLELGVKHKLVEKSGAWYSYNGEKIGQGKANSMKWLNENIEKSDEL
ESRLRAELVANPEQALMADIEQSENSSESESDFE

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=1142713 DQL17_RS01930 WP_111688820.1 380727..381791(+) (recA) [Haemophilus influenzae strain NCTC8455]
ATGGCAACTCAAGAAGAAAAACAAAAAGCACTAGCGGCTGCATTAGGGCAAATAGAAAAACAATTTGGTAAAGGCTCAAT
TATGAAATTAGGCGATACTAAAACGTTGGATGTAGAATCTATTTCTACCGGATCACTTGGCTTAGATGTTGCACTGGGAA
TTGGTGGTTTACCTATGGGTCGAATTGTAGAAATCTTCGGACCTGAATCATCTGGTAAAACAACATTAACTCTTTCCGTC
ATTGCTCAAGCGCAAAAAGCAGGAAAAACCTGTGCATTTATTGATGCAGAACACGCACTTGACCCTATTTATGCAGCAAA
ACTTGGTGTAGATGTAAAAGAACTTTTTGTTTCTCAACCAGATAATGGAGAACAAGCACTTGAAATATGTGATGCATTAG
TTCGTTCTGGCGCAATTGATGTAATTATTGTGGACTCCGTTGCCGCACTGACACCAAAAGCTGAAATTGAAGGCGATATG
GGGGATTCTCATATGGGTCTGCAAGCGCGTTTAATGTCTCAAGCTTTGCGTAAACTCACAGGTCAAATTAAAAATGCAAA
CTGTCTAGTTGTGTTTATTAACCAAATCCGTATGAAAATAGGTGTGATGTTTGGTAATCCTGAAACCACCACAGGCGGTA
ATGCATTAAAATTCTATTCTTCTGTTCGCTTAGATATTCGTCGTACAGGTTCTGTAAAAGATGGCGAAAATATTATAGGA
AATGAAACTCGCGTAAAAGTAGTGAAAAACAAACTAGCAGCACCATTCCGCCAAGTGGATTTCCAAATTCTCTATGGAGA
AGGCATTTCAAAAGCAGGAGAATTACTGGAACTAGGGGTAAAACACAAACTTGTAGAAAAATCAGGCGCGTGGTATTCCT
ATAATGGCGAAAAAATTGGTCAAGGAAAGGCTAATTCAATGAAATGGCTTAACGAAAATATAGAGAAATCAGATGAATTA
GAATCTCGTTTACGTGCGGAATTAGTGGCTAATCCAGAACAAGCCTTAATGGCGGATATTGAACAATCTGAAAATAGTTC
AGAATCAGAAAGTGATTTTGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Glaesserella parasuis strain SC1401

76.012

97.74

0.743
  recA Vibrio cholerae strain A1552

76.9

92.938

0.715
  recA Vibrio cholerae O1 biovar El Tor strain E7946

76.9

92.938

0.715
  recA Pseudomonas stutzeri DSM 10701

75.385

91.808

0.692
  recA Neisseria gonorrhoeae MS11

74.613

91.243

0.681
  recA Neisseria gonorrhoeae MS11

74.613

91.243

0.681
  recA Neisseria gonorrhoeae strain FA1090

74.613

91.243

0.681
  recA Acinetobacter baylyi ADP1

68.195

98.588

0.672
  recA Acinetobacter baumannii D1279779

70.769

91.808

0.65
  recA Ralstonia pseudosolanacearum GMI1000

70.846

90.113

0.638
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.202

94.915

0.59
  recA Helicobacter pylori 26695

60.588

96.045

0.582
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.669

89.548

0.579
  recA Helicobacter pylori strain NCTC11637

60

96.045

0.576
  recA Streptococcus mutans UA159

56.215

100

0.562
  recA Bacillus subtilis subsp. subtilis str. 168

64.286

87.006

0.559
  recA Streptococcus pneumoniae R6

56.41

99.153

0.559
  recA Streptococcus pneumoniae Rx1

56.41

99.153

0.559
  recA Streptococcus pneumoniae D39

56.41

99.153

0.559
  recA Streptococcus pneumoniae TIGR4

56.41

99.153

0.559
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.55

92.373

0.559
  recA Streptococcus mitis NCTC 12261

58.41

92.373

0.54
  recA Streptococcus mitis SK321

58.104

92.373

0.537
  recA Latilactobacillus sakei subsp. sakei 23K

58.514

91.243

0.534
  recA Streptococcus pyogenes NZ131

56.707

92.655

0.525
  recA Lactococcus lactis subsp. cremoris KW2

56

91.808

0.514

Multiple sequence alignment