Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   DQL17_RS01925 Genome accession   NZ_LS483496
Coordinates   379702..380355 (-) Length   217 a.a.
NCBI ID   WP_076773806.1    Uniprot ID   -
Organism   Haemophilus influenzae strain NCTC8455     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 374702..385355
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL17_RS01925 sxy/tfoX 379702..380355 (-) 654 WP_076773806.1 DNA transformation protein TfoX Regulator
  DQL17_RS01930 (NCTC8455_00378) recA 380727..381791 (+) 1065 WP_111688820.1 recombinase RecA Machinery gene
  DQL17_RS01935 (NCTC8455_00379) recX 381870..382328 (+) 459 WP_111688821.1 recombination regulator RecX -
  DQL17_RS01940 (NCTC8455_00380) crcB 382325..382711 (-) 387 WP_021034533.1 fluoride efflux transporter CrcB -
  DQL17_RS01945 (NCTC8455_00381) - 382711..383529 (-) 819 WP_111688822.1 Cof-type HAD-IIB family hydrolase -
  DQL17_RS01950 (NCTC8455_00382) - 383945..384949 (+) 1005 WP_105878677.1 ornithine carbamoyltransferase -

Sequence

Protein


Download         Length: 217 a.a.        Molecular weight: 25189.64 Da        Isoelectric Point: 9.8616

>NTDB_id=1142712 DQL17_RS01925 WP_076773806.1 379702..380355(-) (sxy/tfoX) [Haemophilus influenzae strain NCTC8455]
MNIKDGHIDKVCSLLDLLVGNVTFKNLFTGYGLFHKEETMFAIWQNKKLYLRGEDELATQLIKLGCEPFTTNELNKRFVL
SQYYALTEQVLRNNMLCRKLIILSIKQILEQKLEYTLRKLNRLKDLPNLTIKHERALIKVGITDVVMLREIGAENALVEL
KKNGSGATLDFYWKLVCALQNKNSQMLSQAEKERLLKKLNEVLRKNGLKGYRKLDDE

Nucleotide


Download         Length: 654 bp        

>NTDB_id=1142712 DQL17_RS01925 WP_076773806.1 379702..380355(-) (sxy/tfoX) [Haemophilus influenzae strain NCTC8455]
ATGAATATAAAGGATGGGCATATAGATAAAGTTTGCTCTTTGCTAGACCTGTTAGTAGGAAATGTTACCTTTAAAAATCT
TTTTACTGGTTACGGTTTGTTTCACAAGGAAGAGACAATGTTTGCCATCTGGCAAAATAAAAAGCTTTATTTACGAGGTG
AAGATGAGCTTGCAACTCAATTAATAAAATTAGGTTGTGAACCTTTTACAACGAATGAATTGAATAAACGGTTTGTGCTT
TCACAATATTATGCACTTACTGAACAGGTTTTACGTAATAATATGTTATGTAGAAAATTGATTATTCTTTCTATTAAGCA
GATTCTTGAGCAGAAGCTAGAATATACGTTAAGAAAGTTAAATCGATTAAAGGATTTACCCAATTTAACGATTAAACACG
AAAGAGCTTTAATAAAAGTTGGTATTACAGATGTTGTGATGCTAAGAGAAATTGGTGCAGAAAATGCATTGGTAGAATTA
AAGAAAAATGGCAGTGGTGCTACGCTTGATTTTTATTGGAAGTTAGTATGTGCTTTGCAAAATAAAAATAGTCAGATGTT
AAGTCAAGCTGAAAAAGAGCGTTTATTGAAGAAATTAAACGAAGTTTTGAGAAAAAATGGCTTGAAAGGCTATAGAAAAT
TAGATGATGAATAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(121-198)

TfoX N-terminal domain (TfoX_N)

(19-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Haemophilus influenzae Rd KW20

91.705

100

0.917

Multiple sequence alignment