Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   DQN84_RS12565 Genome accession   NZ_LS483476
Coordinates   2571146..2572183 (-) Length   345 a.a.
NCBI ID   WP_066139464.1    Uniprot ID   A0A2X4WAP1
Organism   Lederbergia lenta strain NCTC4824     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2566146..2577183
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQN84_RS12550 (NCTC4824_02591) - 2567889..2568149 (-) 261 WP_066139449.1 stage V sporulation protein S -
  DQN84_RS12555 (NCTC4824_02592) - 2568292..2569092 (-) 801 WP_066139454.1 TIGR00282 family metallophosphoesterase -
  DQN84_RS12560 (NCTC4824_02593) rny 2569360..2570919 (-) 1560 WP_066139459.1 ribonuclease Y -
  DQN84_RS12565 (NCTC4824_02594) recA 2571146..2572183 (-) 1038 WP_066139464.1 recombinase RecA Machinery gene
  DQN84_RS12570 (NCTC4824_02595) - 2572581..2573051 (-) 471 WP_066139467.1 hypothetical protein -
  DQN84_RS12575 (NCTC4824_02596) cinA 2573205..2574446 (-) 1242 WP_066139470.1 competence/damage-inducible protein A Machinery gene
  DQN84_RS12580 (NCTC4824_02597) pgsA 2574476..2575054 (-) 579 WP_066139476.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  DQN84_RS12585 (NCTC4824_02598) - 2575116..2575997 (-) 882 WP_066139478.1 helix-turn-helix domain-containing protein -
  DQN84_RS12590 (NCTC4824_02599) - 2576016..2576804 (-) 789 WP_066139481.1 YmfK family protein -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 37444.67 Da        Isoelectric Point: 4.8402

>NTDB_id=1142443 DQN84_RS12565 WP_066139464.1 2571146..2572183(-) (recA) [Lederbergia lenta strain NCTC4824]
MSDRQAALDMALKQIEKQFGKGSVMKLGEQTDRKISTIPSGSLALDVALGVGGYPRGRVIEIYGPESSGKTTVALHAIAE
VQANGGTAAFIDAEHALDPVYAQKLGVNIDELLLSQPDTGEQALEIAEALVRSGAIEILVIDSVAALVPKAEIEGEMGDS
HVGLQARLMSQALRKLSGAINKSNTIAIFINQIREKVGVMFGNPEVTPGGRALKFYSSVRLEVRRAEQLKQGQDIVGNKT
KIKIVKNKVAPPFRVAEVDIMYGEGISREGEIVDMGSELDIVEKSGSWYSYNGERLGQGRENAKLFLKENPEVRSEIMSK
IRDHYNLDADKTVVEEEPVDSLLDE

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=1142443 DQN84_RS12565 WP_066139464.1 2571146..2572183(-) (recA) [Lederbergia lenta strain NCTC4824]
ATGAGTGATCGTCAAGCAGCGTTAGATATGGCTTTAAAACAAATAGAGAAACAATTTGGTAAAGGTTCTGTTATGAAATT
GGGTGAACAAACGGATCGTAAGATTTCAACGATTCCAAGTGGTTCGCTAGCATTAGATGTTGCATTAGGAGTAGGCGGAT
ATCCGCGAGGTAGAGTAATAGAAATATATGGTCCGGAAAGTTCAGGTAAAACAACGGTAGCTCTTCATGCTATTGCAGAG
GTACAGGCTAATGGTGGTACAGCAGCATTTATAGATGCGGAACATGCACTTGATCCAGTATATGCTCAGAAATTAGGCGT
TAATATTGATGAACTATTGCTTTCTCAACCGGATACTGGTGAGCAGGCATTGGAAATTGCAGAAGCGCTTGTTCGAAGTG
GTGCAATTGAAATTCTAGTCATTGACTCGGTAGCAGCATTAGTTCCAAAAGCTGAAATCGAGGGAGAGATGGGTGATTCT
CATGTAGGATTACAAGCTCGCTTAATGTCACAAGCGCTACGTAAGCTTTCTGGAGCAATCAACAAGTCAAATACAATTGC
TATATTTATCAACCAAATTAGGGAGAAAGTTGGCGTAATGTTTGGAAATCCAGAAGTAACTCCTGGTGGACGAGCATTAA
AGTTTTATTCTTCTGTACGCCTTGAAGTACGTCGTGCGGAACAACTTAAGCAAGGACAAGATATTGTAGGGAATAAAACA
AAAATAAAAATAGTGAAAAATAAAGTGGCACCTCCATTCCGTGTAGCAGAAGTAGATATTATGTATGGAGAGGGAATTTC
TCGTGAAGGAGAAATTGTCGATATGGGCTCGGAACTCGATATTGTTGAAAAAAGTGGATCTTGGTATTCTTACAATGGGG
AACGCTTAGGGCAAGGACGAGAAAACGCAAAGCTATTTTTGAAAGAAAATCCAGAAGTGCGTAGTGAGATAATGTCCAAA
ATTCGTGATCATTATAATTTAGATGCGGATAAAACAGTTGTAGAAGAAGAACCAGTAGATAGCCTCCTAGACGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2X4WAP1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

85.586

96.522

0.826
  recA Latilactobacillus sakei subsp. sakei 23K

72.334

100

0.728
  recA Streptococcus pneumoniae D39

64.943

100

0.655
  recA Streptococcus pneumoniae Rx1

64.943

100

0.655
  recA Streptococcus pneumoniae R6

64.943

100

0.655
  recA Streptococcus pneumoniae TIGR4

64.943

100

0.655
  recA Streptococcus mutans UA159

68.389

95.362

0.652
  recA Streptococcus pyogenes NZ131

68.502

94.783

0.649
  recA Streptococcus mitis SK321

67.273

95.652

0.643
  recA Streptococcus mitis NCTC 12261

66.97

95.652

0.641
  recA Lactococcus lactis subsp. cremoris KW2

65.179

97.391

0.635
  recA Neisseria gonorrhoeae MS11

66.355

93.043

0.617
  recA Neisseria gonorrhoeae strain FA1090

66.355

93.043

0.617
  recA Neisseria gonorrhoeae MS11

66.355

93.043

0.617
  recA Ralstonia pseudosolanacearum GMI1000

67.732

90.725

0.614
  recA Acinetobacter baumannii D1279779

60.694

100

0.609
  recA Acinetobacter baylyi ADP1

61.29

98.841

0.606
  recA Helicobacter pylori strain NCTC11637

60.704

98.841

0.6
  recA Helicobacter pylori 26695

60.704

98.841

0.6
  recA Vibrio cholerae strain A1552

64.486

93.043

0.6
  recA Vibrio cholerae O1 biovar El Tor strain E7946

64.486

93.043

0.6
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.195

95.072

0.591
  recA Pseudomonas stutzeri DSM 10701

63.438

92.754

0.588
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.08

94.783

0.588
  recA Glaesserella parasuis strain SC1401

62.5

92.754

0.58
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.615

94.203

0.571

Multiple sequence alignment