Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   DQN84_RS12575 Genome accession   NZ_LS483476
Coordinates   2573205..2574446 (-) Length   413 a.a.
NCBI ID   WP_066139470.1    Uniprot ID   A0A2X4Z729
Organism   Lederbergia lenta strain NCTC4824     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 2568205..2579446
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQN84_RS12555 (NCTC4824_02592) - 2568292..2569092 (-) 801 WP_066139454.1 TIGR00282 family metallophosphoesterase -
  DQN84_RS12560 (NCTC4824_02593) rny 2569360..2570919 (-) 1560 WP_066139459.1 ribonuclease Y -
  DQN84_RS12565 (NCTC4824_02594) recA 2571146..2572183 (-) 1038 WP_066139464.1 recombinase RecA Machinery gene
  DQN84_RS12570 (NCTC4824_02595) - 2572581..2573051 (-) 471 WP_066139467.1 hypothetical protein -
  DQN84_RS12575 (NCTC4824_02596) cinA 2573205..2574446 (-) 1242 WP_066139470.1 competence/damage-inducible protein A Machinery gene
  DQN84_RS12580 (NCTC4824_02597) pgsA 2574476..2575054 (-) 579 WP_066139476.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  DQN84_RS12585 (NCTC4824_02598) - 2575116..2575997 (-) 882 WP_066139478.1 helix-turn-helix domain-containing protein -
  DQN84_RS12590 (NCTC4824_02599) - 2576016..2576804 (-) 789 WP_066139481.1 YmfK family protein -
  DQN84_RS12595 (NCTC4824_02600) - 2576979..2577236 (-) 258 WP_066139484.1 DUF3243 domain-containing protein -
  DQN84_RS12600 (NCTC4824_02601) ymfI 2577317..2578039 (-) 723 WP_066139487.1 elongation factor P 5-aminopentanone reductase -
  DQN84_RS12605 (NCTC4824_02602) yfmH 2578096..2579385 (-) 1290 WP_066139489.1 EF-P 5-aminopentanol modification-associated protein YfmH -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 45085.77 Da        Isoelectric Point: 5.1938

>NTDB_id=1142444 DQN84_RS12575 WP_066139470.1 2573205..2574446(-) (cinA) [Lederbergia lenta strain NCTC4824]
MNAEIIAVGTELLLGQIANTNAQFLSAQLAEIGVNIYHHTVVGDNPARLKKAIVQAEERANLIIFTGGLGPTKDDLTKET
IAQHLGKQLIIDEIAMQTILDYFDKTGRVMTANNKKQALVIEGGNVLPNEHGMAPGMFINAGSTYFMLLPGPPHEMQPMF
RNYGRPAIEAEMGATEKIESLVLRYFGIGEAELAEKLSDIIDEQTNPTVAPLAGDGEVTLRITARHRQGSVARSMIKEME
EKVNLLVGEYFYGYDETSLMRELLKTLEEKKLTIAAAESLTGGLFQSEMTAVVGVSTMLIGGVVCYSNQSKLTLCNVKEE
TINKYGVVSEQCAIELAENIRSMLGTDIGISFTGAAGPDSLEGNPAGTVWIGISFKNQQPKSYLLKLAGSRNGNRKRSVK
YGCYYLLQELQQR

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=1142444 DQN84_RS12575 WP_066139470.1 2573205..2574446(-) (cinA) [Lederbergia lenta strain NCTC4824]
ATGAATGCTGAAATTATCGCTGTTGGCACAGAACTATTATTAGGTCAAATCGCTAACACAAATGCTCAATTCCTTTCCGC
ACAACTTGCTGAAATTGGCGTGAATATTTATCACCACACAGTCGTGGGTGATAATCCTGCACGCTTGAAAAAGGCGATCG
TACAAGCCGAAGAAAGAGCGAATCTCATCATTTTCACTGGTGGCCTTGGTCCGACGAAAGATGATTTGACGAAAGAAACC
ATTGCACAACATTTAGGTAAACAGTTAATAATAGATGAGATCGCCATGCAAACTATTTTAGATTATTTTGATAAAACTGG
CAGAGTGATGACTGCTAACAATAAAAAACAAGCACTTGTTATTGAAGGTGGAAATGTATTACCAAATGAACATGGAATGG
CTCCGGGAATGTTTATAAATGCTGGCTCAACTTATTTTATGCTACTCCCTGGCCCACCACATGAGATGCAGCCTATGTTT
AGAAATTATGGTCGTCCTGCAATTGAAGCAGAAATGGGAGCGACTGAAAAAATTGAATCGCTTGTCCTTCGCTATTTTGG
AATTGGGGAAGCTGAGCTTGCTGAAAAACTATCCGATATTATTGATGAGCAAACAAATCCTACGGTAGCACCTCTTGCGG
GTGATGGTGAAGTAACGCTTAGAATTACTGCCCGCCATCGTCAAGGATCTGTTGCACGCAGCATGATAAAAGAAATGGAA
GAGAAAGTTAATTTACTGGTGGGCGAGTACTTTTACGGATATGATGAAACTTCGCTCATGAGGGAATTATTAAAAACCTT
AGAAGAAAAAAAATTAACGATTGCTGCAGCAGAAAGTTTAACTGGTGGTTTGTTCCAGTCTGAAATGACAGCAGTAGTTG
GTGTAAGTACAATGTTAATCGGTGGAGTCGTCTGTTATTCTAACCAATCAAAATTGACCCTATGTAATGTGAAAGAAGAA
ACAATAAATAAATATGGGGTTGTTAGTGAACAGTGTGCAATAGAACTAGCTGAAAATATTCGGTCGATGCTTGGAACGGA
TATTGGAATTAGTTTTACAGGCGCTGCCGGTCCAGATTCGCTCGAAGGAAACCCGGCAGGCACTGTATGGATCGGTATAT
CGTTTAAGAATCAACAACCGAAATCTTATTTATTAAAACTTGCAGGCTCGCGAAATGGTAACCGAAAAAGGTCAGTGAAA
TATGGCTGTTATTATTTACTTCAAGAACTTCAACAGAGATAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(182-253)

Competence-damaged protein (CinA)

(257-409)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2X4Z729

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

57.908

99.516

0.576
  cinA Streptococcus mitis SK321

45.953

92.736

0.426
  cinA Streptococcus mitis NCTC 12261

45.431

92.736

0.421
  cinA Streptococcus pneumoniae TIGR4

45.431

92.736

0.421
  cinA Streptococcus pneumoniae Rx1

45.17

92.736

0.419
  cinA Streptococcus pneumoniae R6

45.17

92.736

0.419
  cinA Streptococcus pneumoniae D39

44.909

92.736

0.416
  cinA Streptococcus mutans UA159

45.119

91.768

0.414

Multiple sequence alignment