Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   DQN21_RS12105 Genome accession   NZ_LS483409
Coordinates   2416778..2417932 (-) Length   384 a.a.
NCBI ID   WP_009855165.1    Uniprot ID   -
Organism   Streptococcus gallolyticus strain NCTC13773     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2411778..2422932
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQN21_RS12080 (NCTC13773_02452) - 2412901..2414490 (-) 1590 WP_077497918.1 DUF2079 domain-containing protein -
  DQN21_RS12900 - 2414533..2414661 (-) 129 WP_099046295.1 hypothetical protein -
  DQN21_RS12085 (NCTC13773_02453) - 2414753..2415070 (-) 318 WP_006531413.1 DUF1292 domain-containing protein -
  DQN21_RS12090 (NCTC13773_02454) ruvX 2415103..2415522 (-) 420 WP_009855163.1 Holliday junction resolvase RuvX -
  DQN21_RS12095 (NCTC13773_02455) - 2415519..2415788 (-) 270 WP_003066890.1 IreB family regulatory phosphoprotein -
  DQN21_RS12100 (NCTC13773_02456) spx 2416110..2416508 (-) 399 WP_009855164.1 transcriptional regulator Spx -
  DQN21_RS12105 (NCTC13773_02457) recA 2416778..2417932 (-) 1155 WP_009855165.1 recombinase RecA Machinery gene
  DQN21_RS12110 (NCTC13773_02458) cinA 2417982..2419241 (-) 1260 WP_077497920.1 competence/damage-inducible protein A Machinery gene
  DQN21_RS12115 (NCTC13773_02459) - 2419373..2420563 (-) 1191 WP_077497922.1 MFS transporter -
  DQN21_RS12655 - 2420723..2420896 (-) 174 WP_167367618.1 hypothetical protein -
  DQN21_RS12120 (NCTC13773_02460) - 2420946..2421410 (-) 465 WP_077497924.1 hypothetical protein -
  DQN21_RS12125 (NCTC13773_02461) - 2421480..2421887 (-) 408 WP_077497926.1 hypothetical protein -
  DQN21_RS12130 (NCTC13773_02462) - 2422050..2422891 (+) 842 Protein_2333 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 384 a.a.        Molecular weight: 41233.81 Da        Isoelectric Point: 4.8577

>NTDB_id=1140594 DQN21_RS12105 WP_009855165.1 2416778..2417932(-) (recA) [Streptococcus gallolyticus strain NCTC13773]
MAKKTKKTEAITKKFGDERKKALDDALKLIEKDFGKGAVMRLGERAEQKVQVMSSGSLALDIALGAGGYPKGRIIEIYGP
ESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVA
ALVPRAEIDGDIGDNHVGLQARMMSQAMRKLSASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRG
NTQIKGSGDQKDSNIGKETKIKVVKNKVAPPFKTAEVEIMYGEGISRTGELVKIASDLDIIKKAGAWFSYNGEKIGQGSE
NAKKYLAEHPEVFDEIDHKVRVHYGLVEETEDEKAADVVEESAATNDNVDEVVLDLDDAIEIEE

Nucleotide


Download         Length: 1155 bp        

>NTDB_id=1140594 DQN21_RS12105 WP_009855165.1 2416778..2417932(-) (recA) [Streptococcus gallolyticus strain NCTC13773]
TTGGCTAAAAAGACAAAGAAAACAGAAGCTATCACTAAAAAATTTGGTGATGAGCGTAAAAAGGCACTTGATGATGCCTT
GAAATTAATTGAAAAAGATTTCGGTAAGGGAGCTGTTATGCGCCTTGGTGAACGTGCTGAACAAAAAGTTCAAGTCATGA
GTTCAGGTAGCTTGGCTCTTGATATTGCTTTGGGTGCAGGTGGCTACCCTAAAGGGCGCATCATTGAAATTTATGGACCT
GAAAGTTCTGGTAAGACAACTGTTGCGCTTCATGCGGTAGCACAAGCTCAAAAAGAAGGTGGAATTGCTGCCTTTATTGA
TGCCGAACACGCACTTGACCCAGCTTATGCTGCGGCTCTTGGTGTTAACATTGATGAGCTTCTCTTGTCACAACCTGACT
CTGGGGAACAAGGTCTTGAAATTGCAGGAAAATTGATTGACTCAGGTGCTGTTGACCTCGTCGTTGTCGATTCTGTTGCT
GCCCTTGTACCTCGTGCCGAAATCGATGGTGACATTGGTGATAATCACGTTGGTTTGCAAGCTCGTATGATGAGTCAAGC
AATGCGTAAATTGTCAGCTTCAATCAACAAAACAAAAACAATTGCGATTTTCATCAACCAGTTGCGTGAAAAAGTTGGTG
TGATGTTTGGTAACCCAGAAACAACACCTGGTGGACGCGCGCTTAAGTTCTATGCGTCAGTTCGTCTTGATGTCCGTGGT
AACACACAAATCAAAGGTTCTGGTGACCAAAAAGATAGCAATATCGGTAAAGAAACTAAAATCAAAGTGGTTAAAAACAA
AGTTGCGCCACCATTTAAAACAGCTGAAGTTGAAATTATGTACGGTGAAGGAATTTCACGTACGGGTGAGCTTGTTAAGA
TTGCTAGCGACCTAGACATCATCAAAAAAGCAGGTGCTTGGTTCTCGTATAACGGTGAGAAAATCGGACAAGGTTCTGAA
AATGCGAAGAAATACTTGGCAGAACACCCAGAAGTCTTTGATGAAATCGACCACAAAGTACGTGTTCACTACGGTCTTGT
AGAAGAAACCGAAGATGAGAAAGCAGCAGATGTTGTTGAAGAATCAGCAGCAACTAATGATAATGTTGACGAAGTTGTTC
TTGATTTAGATGATGCTATCGAAATCGAAGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(21-286)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Streptococcus pyogenes NZ131

89.323

100

0.893
  recA Streptococcus mutans UA159

87.306

100

0.878
  recA Streptococcus mitis NCTC 12261

86.198

100

0.862
  recA Streptococcus mitis SK321

86.198

100

0.862
  recA Streptococcus pneumoniae D39

85.309

100

0.862
  recA Streptococcus pneumoniae Rx1

85.309

100

0.862
  recA Streptococcus pneumoniae R6

85.309

100

0.862
  recA Streptococcus pneumoniae TIGR4

85.309

100

0.862
  recA Lactococcus lactis subsp. cremoris KW2

79.143

91.146

0.721
  recA Latilactobacillus sakei subsp. sakei 23K

66.849

95.052

0.635
  recA Bacillus subtilis subsp. subtilis str. 168

68.693

85.677

0.589
  recA Neisseria gonorrhoeae strain FA1090

60

91.146

0.547
  recA Neisseria gonorrhoeae MS11

60

91.146

0.547
  recA Neisseria gonorrhoeae MS11

60

91.146

0.547
  recA Acinetobacter baumannii D1279779

59.49

91.927

0.547
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.062

88.281

0.539
  recA Glaesserella parasuis strain SC1401

60.588

88.542

0.536
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

63.467

84.115

0.534
  recA Acinetobacter baylyi ADP1

60

88.542

0.531
  recA Pseudomonas stutzeri DSM 10701

57.349

90.365

0.518
  recA Vibrio cholerae strain A1552

61.231

84.635

0.518
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.231

84.635

0.518
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

59.215

86.198

0.51
  recA Helicobacter pylori 26695

58.084

86.979

0.505
  recA Helicobacter pylori strain NCTC11637

58.084

86.979

0.505
  recA Ralstonia pseudosolanacearum GMI1000

59.621

82.552

0.492

Multiple sequence alignment