Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   DQM65_RS02655 Genome accession   NZ_LS483392
Coordinates   508184..509248 (-) Length   354 a.a.
NCBI ID   WP_050848032.1    Uniprot ID   A0AB37B571
Organism   Haemophilus influenzae strain NCTC11931     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 503184..514248
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM65_RS02630 (NCTC11931_00524) arcC 504085..505017 (-) 933 WP_111691155.1 carbamate kinase -
  DQM65_RS02635 (NCTC11931_00525) - 505027..506031 (-) 1005 WP_111691156.1 ornithine carbamoyltransferase -
  DQM65_RS02640 (NCTC11931_00526) - 506447..507265 (+) 819 WP_021034534.1 Cof-type HAD-IIB family hydrolase -
  DQM65_RS02645 (NCTC11931_00527) crcB 507265..507651 (+) 387 WP_111691157.1 fluoride efflux transporter CrcB -
  DQM65_RS02650 (NCTC11931_00528) recX 507648..508106 (-) 459 WP_111691158.1 recombination regulator RecX -
  DQM65_RS02655 (NCTC11931_00529) recA 508184..509248 (-) 1065 WP_050848032.1 recombinase RecA Machinery gene
  DQM65_RS02660 sxy/tfoX 509620..510273 (+) 654 WP_111691159.1 DNA transformation protein TfoX Regulator

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 38091.51 Da        Isoelectric Point: 4.8875

>NTDB_id=1140025 DQM65_RS02655 WP_050848032.1 508184..509248(-) (recA) [Haemophilus influenzae strain NCTC11931]
MATQEEKQKALAAALGQIEKQFGKGSIMKLGDTKTLDVESISTGSLGLDVALGIGGLPMGRIVEIFGPESSGKTTLTLSV
IAQAQKAGKTCAFIDAEHALDPIYAAKLGVDVKELFVSQPDNGEQALEICDALVRSGAIDVIIVDSVAALTPKAEIEGDM
GDSHMGLQARLMSQALRKLTGQIKNANCLVVFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRTGSVKDGENIIG
NETRVKVVKNKLAAPFRQVDFQILYGEGISKAGELLELGVKHKLVEKSGAWYSYNGEKIGQGKANSMKWLNENIEKSDEL
EARLRAELVANPEQALMADIEQSENSSESESDFE

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=1140025 DQM65_RS02655 WP_050848032.1 508184..509248(-) (recA) [Haemophilus influenzae strain NCTC11931]
ATGGCAACTCAAGAAGAAAAACAAAAAGCACTAGCAGCTGCACTAGGGCAAATCGAAAAACAATTTGGTAAAGGCTCAAT
TATGAAATTAGGCGATACTAAAACGTTGGATGTAGAATCTATTTCTACCGGATCACTTGGCTTAGATGTTGCACTAGGAA
TTGGTGGTTTACCTATGGGTCGAATTGTAGAAATTTTCGGGCCTGAATCATCTGGTAAAACAACATTAACTCTTTCCGTC
ATTGCTCAAGCGCAAAAAGCAGGAAAAACCTGTGCATTTATTGATGCAGAACACGCACTTGACCCTATTTATGCTGCAAA
ACTTGGTGTAGATGTAAAAGAGCTTTTTGTTTCTCAACCAGATAATGGGGAACAGGCACTTGAAATCTGTGATGCATTAG
TTCGCTCAGGTGCAATTGATGTAATTATTGTGGACTCCGTTGCCGCACTGACACCAAAAGCTGAAATTGAAGGCGATATG
GGCGATTCTCATATGGGTCTGCAAGCACGTTTAATGTCTCAAGCTTTGCGTAAACTCACAGGTCAAATTAAAAATGCAAA
CTGTCTAGTTGTGTTTATTAACCAAATCCGTATGAAAATAGGTGTGATGTTTGGTAATCCTGAAACCACCACAGGCGGTA
ATGCATTAAAATTCTATTCTTCTGTTCGCTTAGATATTCGTCGTACAGGTTCTGTAAAAGATGGCGAAAATATTATAGGA
AATGAAACTCGCGTAAAAGTAGTAAAAAACAAACTAGCAGCACCATTCCGCCAAGTGGATTTCCAAATTCTCTATGGAGA
AGGCATTTCAAAAGCAGGTGAATTATTAGAACTTGGAGTAAAACACAAACTTGTAGAAAAATCAGGTGCGTGGTATTCCT
ATAATGGCGAAAAAATTGGTCAAGGAAAGGCTAATTCAATGAAATGGCTTAACGAAAATATAGAAAAATCAGATGAATTA
GAAGCTCGTTTACGTGCTGAATTAGTAGCTAATCCAGAACAAGCCTTAATGGCTGACATTGAACAATCTGAAAATAGTTC
AGAATCAGAAAGTGATTTTGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Glaesserella parasuis strain SC1401

76.012

97.74

0.743
  recA Vibrio cholerae strain A1552

76.9

92.938

0.715
  recA Vibrio cholerae O1 biovar El Tor strain E7946

76.9

92.938

0.715
  recA Pseudomonas stutzeri DSM 10701

75.385

91.808

0.692
  recA Neisseria gonorrhoeae MS11

74.923

91.243

0.684
  recA Neisseria gonorrhoeae MS11

74.923

91.243

0.684
  recA Neisseria gonorrhoeae strain FA1090

74.923

91.243

0.684
  recA Acinetobacter baylyi ADP1

68.481

98.588

0.675
  recA Acinetobacter baumannii D1279779

70.769

91.808

0.65
  recA Ralstonia pseudosolanacearum GMI1000

70.846

90.113

0.638
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.5

94.915

0.593
  recA Helicobacter pylori 26695

60.588

96.045

0.582
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.669

89.548

0.579
  recA Helicobacter pylori strain NCTC11637

60

96.045

0.576
  recA Streptococcus mutans UA159

56.215

100

0.562
  recA Bacillus subtilis subsp. subtilis str. 168

64.286

87.006

0.559
  recA Streptococcus pneumoniae R6

56.41

99.153

0.559
  recA Streptococcus pneumoniae Rx1

56.41

99.153

0.559
  recA Streptococcus pneumoniae D39

56.41

99.153

0.559
  recA Streptococcus pneumoniae TIGR4

56.41

99.153

0.559
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.55

92.373

0.559
  recA Streptococcus mitis NCTC 12261

58.41

92.373

0.54
  recA Streptococcus mitis SK321

58.104

92.373

0.537
  recA Latilactobacillus sakei subsp. sakei 23K

58.514

91.243

0.534
  recA Streptococcus pyogenes NZ131

56.707

92.655

0.525
  recA Lactococcus lactis subsp. cremoris KW2

56

91.808

0.514

Multiple sequence alignment