Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   DQM65_RS02660 Genome accession   NZ_LS483392
Coordinates   509620..510273 (+) Length   217 a.a.
NCBI ID   WP_111691159.1    Uniprot ID   -
Organism   Haemophilus influenzae strain NCTC11931     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 504620..515273
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM65_RS02635 (NCTC11931_00525) - 505027..506031 (-) 1005 WP_111691156.1 ornithine carbamoyltransferase -
  DQM65_RS02640 (NCTC11931_00526) - 506447..507265 (+) 819 WP_021034534.1 Cof-type HAD-IIB family hydrolase -
  DQM65_RS02645 (NCTC11931_00527) crcB 507265..507651 (+) 387 WP_111691157.1 fluoride efflux transporter CrcB -
  DQM65_RS02650 (NCTC11931_00528) recX 507648..508106 (-) 459 WP_111691158.1 recombination regulator RecX -
  DQM65_RS02655 (NCTC11931_00529) recA 508184..509248 (-) 1065 WP_050848032.1 recombinase RecA Machinery gene
  DQM65_RS02660 sxy/tfoX 509620..510273 (+) 654 WP_111691159.1 DNA transformation protein TfoX Regulator

Sequence

Protein


Download         Length: 217 a.a.        Molecular weight: 25133.61 Da        Isoelectric Point: 9.6644

>NTDB_id=1140026 DQM65_RS02660 WP_111691159.1 509620..510273(+) (sxy/tfoX) [Haemophilus influenzae strain NCTC11931]
MNIKDGHIDKVCSLLDLLVGNVTFKNLFTGYGLFHKEETMFAIWQNKKLYLRGEDELATQLIKLGCEPFTTNELNKRFVL
SQYYALTEQVLRNNMLCRKLIILSIKQIIEQKLECTLRKLNQLKDLPNLTIKHERALIKVGITDVMMLREIGAENALVEL
KKNGSGATLDFYWKLVCALQNKNSQMLSQAEKERLLKKLNEVLRKNGLKGYRKLDDE

Nucleotide


Download         Length: 654 bp        

>NTDB_id=1140026 DQM65_RS02660 WP_111691159.1 509620..510273(+) (sxy/tfoX) [Haemophilus influenzae strain NCTC11931]
ATGAATATAAAGGATGGGCATATAGATAAAGTTTGCTCTTTGCTAGACCTGTTAGTAGGAAATGTTACCTTTAAAAATCT
TTTTACTGGTTACGGTTTGTTTCACAAGGAAGAGACAATGTTTGCCATCTGGCAAAATAAAAAGCTTTATTTACGAGGTG
AAGATGAGCTTGCAACTCAATTAATAAAATTAGGTTGTGAACCTTTTACAACGAATGAATTGAATAAACGGTTTGTGCTT
TCACAATATTATGCACTTACTGAACAGGTTTTACGTAATAATATGTTATGTAGAAAATTGATTATTCTTTCTATTAAGCA
GATTATTGAGCAGAAGCTAGAATGTACGTTAAGAAAGTTAAATCAATTAAAGGATTTACCCAATTTAACGATTAAACACG
AAAGAGCTTTAATAAAAGTTGGTATTACAGATGTTATGATGCTAAGAGAAATTGGTGCAGAAAATGCATTGGTGGAATTA
AAGAAAAATGGCAGTGGTGCTACGCTTGATTTTTATTGGAAGTTAGTATGTGCTTTGCAAAATAAAAATAGTCAGATGTT
AAGTCAAGCTGAAAAAGAGCGTTTATTGAAGAAATTAAACGAAGTTTTGAGAAAAAATGGCTTGAAAGGCTATAGAAAAT
TAGATGATGAATAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(121-198)

TfoX N-terminal domain (TfoX_N)

(19-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Haemophilus influenzae Rd KW20

91.244

100

0.912

Multiple sequence alignment