Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   DQM69_RS10050 Genome accession   NZ_LS483381
Coordinates   2068075..2069217 (-) Length   380 a.a.
NCBI ID   WP_002960557.1    Uniprot ID   U2KP89
Organism   Streptococcus sobrinus strain NCTC10921     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2063075..2074217
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM69_RS10020 (NCTC10921_02001) - 2063424..2065067 (-) 1644 WP_109982786.1 DUF2079 domain-containing protein -
  DQM69_RS10025 (NCTC10921_02003) - 2065408..2065707 (-) 300 WP_002960548.1 DUF1292 domain-containing protein -
  DQM69_RS10030 (NCTC10921_02004) ruvX 2065722..2066141 (-) 420 WP_109982787.1 Holliday junction resolvase RuvX -
  DQM69_RS10035 (NCTC10921_02005) - 2066141..2066407 (-) 267 WP_002960554.1 IreB family regulatory phosphoprotein -
  DQM69_RS10700 (NCTC10921_02006) - 2066564..2067148 (-) 585 WP_019769158.1 SP0191 family lipoprotein -
  DQM69_RS10045 (NCTC10921_02007) spx 2067378..2067776 (-) 399 WP_109982788.1 transcriptional regulator Spx -
  DQM69_RS10050 (NCTC10921_02008) recA 2068075..2069217 (-) 1143 WP_002960557.1 recombinase RecA Machinery gene
  DQM69_RS10055 (NCTC10921_02009) cinA 2069436..2070704 (-) 1269 WP_019785248.1 competence/damage-inducible protein A Machinery gene
  DQM69_RS10060 (NCTC10921_02010) - 2071215..2073128 (+) 1914 WP_019775059.1 ATP-binding cassette domain-containing protein -
  DQM69_RS10065 - 2073167..2073430 (+) 264 WP_109982789.1 hypothetical protein -
  DQM69_RS10070 (NCTC10921_02011) - 2073480..2073881 (+) 402 WP_019777428.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 380 a.a.        Molecular weight: 40834.53 Da        Isoelectric Point: 4.9662

>NTDB_id=1139422 DQM69_RS10050 WP_002960557.1 2068075..2069217(-) (recA) [Streptococcus sobrinus strain NCTC10921]
MAKKTKKTDEITKKFGDERKKALDDALKTIEKDFGKGAIMKLGERADQKVQVMSSGSLALDIALGVGGYPKGRIIEIYGP
ESSGKTTVALHAVAQAQKEGGVAAFIDAEHALDPSYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVA
ALVPRAEIDGDIGDSHVGLQARMMSQAMRKLSASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYSSVRLDVRG
NTQIKGTGDQKDSSIGKETKIKVVKNKVAPPFKVAQVEIMYGEGISRTGELVKIATDLDIIQKAGAWYSYNGEKIGQGSE
NAKKYLADNPEVFDAIDKKVRIKYGLIEDDQAVEAQPVQAEAKEEPEELSLDLESIEIEE

Nucleotide


Download         Length: 1143 bp        

>NTDB_id=1139422 DQM69_RS10050 WP_002960557.1 2068075..2069217(-) (recA) [Streptococcus sobrinus strain NCTC10921]
TTGGCGAAAAAAACAAAAAAAACTGATGAAATCACCAAAAAATTTGGCGATGAACGTAAAAAAGCCTTAGATGATGCTCT
AAAAACCATCGAAAAAGACTTTGGTAAGGGTGCCATCATGAAGCTGGGGGAAAGAGCTGACCAAAAGGTTCAAGTCATGA
GTTCAGGTAGCTTAGCTCTTGACATCGCCTTGGGTGTTGGTGGCTATCCAAAGGGACGGATTATTGAAATCTACGGGCCT
GAAAGTTCTGGTAAGACGACAGTTGCCCTGCATGCTGTTGCACAAGCACAAAAAGAAGGTGGTGTTGCAGCCTTTATTGA
TGCTGAACATGCTCTAGATCCAAGTTATGCCGCGGCTCTTGGTGTTAATATTGATGAATTGCTGCTGTCTCAACCAGATT
CAGGTGAGCAAGGACTGGAAATTGCCGGTAAGTTGATTGACTCTGGTGCCGTTGACCTGGTTGTAGTCGACTCTGTTGCC
GCCCTGGTTCCTCGTGCCGAAATTGATGGTGATATCGGTGATAGCCACGTGGGCCTCCAAGCACGGATGATGAGCCAAGC
CATGCGTAAACTTTCAGCCTCCATCAACAAGACCAAGACCATTGCCATCTTTATCAACCAATTGCGGGAAAAAGTTGGAG
TTATGTTTGGTAACCCAGAAACCACTCCTGGTGGCCGTGCCCTCAAATTCTACTCATCAGTTCGTCTTGATGTCCGTGGT
AATACCCAGATCAAGGGAACCGGTGACCAAAAGGATAGCAGTATTGGTAAGGAAACCAAGATTAAGGTCGTTAAGAACAA
GGTAGCCCCACCATTTAAGGTAGCCCAAGTGGAAATCATGTACGGAGAAGGCATCTCCAGAACTGGTGAGCTGGTTAAGA
TTGCGACCGACCTTGATATTATCCAAAAAGCCGGTGCTTGGTACTCTTATAATGGTGAAAAGATTGGTCAAGGATCTGAA
AATGCTAAGAAATACCTGGCGGATAATCCAGAAGTCTTTGACGCAATCGATAAGAAGGTTCGTATCAAGTATGGTCTCAT
TGAAGATGACCAAGCTGTAGAAGCCCAACCGGTCCAAGCAGAGGCCAAGGAAGAGCCAGAAGAGTTATCCCTTGACCTAG
AGAGCATCGAAATCGAAGAGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(21-286)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB U2KP89

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Streptococcus pyogenes NZ131

87.927

100

0.882
  recA Streptococcus mutans UA159

86.684

100

0.874
  recA Streptococcus pneumoniae R6

84.103

100

0.863
  recA Streptococcus pneumoniae Rx1

84.103

100

0.863
  recA Streptococcus pneumoniae D39

84.103

100

0.863
  recA Streptococcus pneumoniae TIGR4

84.103

100

0.863
  recA Streptococcus mitis SK321

84.896

100

0.858
  recA Streptococcus mitis NCTC 12261

84.635

100

0.855
  recA Lactococcus lactis subsp. cremoris KW2

76.571

92.105

0.705
  recA Latilactobacillus sakei subsp. sakei 23K

72.424

86.842

0.629
  recA Bacillus subtilis subsp. subtilis str. 168

70.213

86.579

0.608
  recA Acinetobacter baumannii D1279779

59.04

93.158

0.55
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.142

87.105

0.55
  recA Neisseria gonorrhoeae strain FA1090

62.84

87.105

0.547
  recA Neisseria gonorrhoeae MS11

62.84

87.105

0.547
  recA Neisseria gonorrhoeae MS11

62.84

87.105

0.547
  recA Glaesserella parasuis strain SC1401

60.882

89.474

0.545
  recA Acinetobacter baylyi ADP1

58.357

92.895

0.542
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

63.158

85

0.537
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.538

85.526

0.526
  recA Vibrio cholerae strain A1552

61.538

85.526

0.526
  recA Pseudomonas stutzeri DSM 10701

56.725

90

0.511
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.61

87.105

0.511
  recA Helicobacter pylori strain NCTC11637

55.233

90.526

0.5
  recA Helicobacter pylori 26695

55.233

90.526

0.5
  recA Ralstonia pseudosolanacearum GMI1000

59.937

83.421

0.5

Multiple sequence alignment