Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   DQM75_RS09385 Genome accession   NZ_LS483380
Coordinates   1963282..1964418 (-) Length   378 a.a.
NCBI ID   WP_012678688.1    Uniprot ID   A0A2X4CGE9
Organism   Streptococcus equi subsp. zooepidemicus strain NCTC11824     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1958282..1969418
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM75_RS09360 (NCTC11824_01881) - 1959294..1960853 (-) 1560 WP_195759339.1 DUF2079 domain-containing protein -
  DQM75_RS09365 (NCTC11824_01882) - 1961402..1961701 (-) 300 WP_012516437.1 DUF1292 domain-containing protein -
  DQM75_RS09370 (NCTC11824_01883) ruvX 1961711..1962130 (-) 420 WP_015898660.1 Holliday junction resolvase RuvX -
  DQM75_RS09375 (NCTC11824_01884) - 1962127..1962396 (-) 270 WP_012516439.1 IreB family regulatory phosphoprotein -
  DQM75_RS09380 (NCTC11824_01885) spx 1962508..1962906 (-) 399 WP_012516440.1 transcriptional regulator Spx -
  DQM75_RS09385 (NCTC11824_01886) recA 1963282..1964418 (-) 1137 WP_012678688.1 recombinase RecA Machinery gene
  DQM75_RS09390 (NCTC11824_01887) cinA 1964512..1965783 (-) 1272 WP_111692840.1 competence/damage-inducible protein A Machinery gene
  DQM75_RS09395 (NCTC11824_01888) - 1966469..1966759 (-) 291 WP_012516443.1 hypothetical protein -
  DQM75_RS09400 (NCTC11824_01889) - 1966753..1967325 (-) 573 WP_111692841.1 phospholipase -
  DQM75_RS09405 (NCTC11824_01890) - 1967622..1968467 (+) 846 WP_111692842.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 378 a.a.        Molecular weight: 40562.19 Da        Isoelectric Point: 4.9679

>NTDB_id=1139364 DQM75_RS09385 WP_012678688.1 1963282..1964418(-) (recA) [Streptococcus equi subsp. zooepidemicus strain NCTC11824]
MAKKVKKNEEITKKFGDERRKALDDALKNIEKDFGKGAVMRLGERAEQKVQVMSSGSLALDIALGAGGYPKGRIIEIYGP
ESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVA
ALVPRAEIDGDIGDNHVGLQARMMSQAMRKLSASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRG
TTQIKGTGDQKDSSIGKETKIKVVKNKVAPPFKVAEVEIMYGEGISRTGELIKIASDLDIIQKAGAWFSYNGEKIGQGSE
NAKRYLADHPELFDEIDHKVRVKFGLLEDTEESAAADTVAAKADELVLELDDAIEIED

Nucleotide


Download         Length: 1137 bp        

>NTDB_id=1139364 DQM75_RS09385 WP_012678688.1 1963282..1964418(-) (recA) [Streptococcus equi subsp. zooepidemicus strain NCTC11824]
TTGGCAAAAAAAGTTAAAAAAAATGAAGAAATCACCAAAAAATTTGGTGATGAACGTCGTAAGGCACTTGATGATGCGTT
AAAGAACATTGAAAAAGATTTTGGTAAGGGTGCGGTTATGCGCCTTGGTGAACGTGCAGAGCAAAAGGTTCAGGTGATGA
GTTCGGGCAGTCTTGCTTTAGACATTGCGCTTGGAGCAGGTGGCTATCCTAAAGGGCGTATTATTGAAATCTATGGACCA
GAGTCTTCTGGTAAAACAACAGTTGCCCTGCATGCAGTAGCGCAGGCTCAAAAAGAAGGTGGTATTGCAGCCTTCATTGA
TGCGGAGCATGCCTTGGATCCTGCCTATGCTGCGGCGCTGGGTGTTAATATTGATGAGCTGCTTTTATCACAGCCGGATT
CTGGTGAGCAAGGACTTGAGATAGCAGGTAAACTGATTGATTCTGGTGCTGTTGATTTGGTTGTTGTCGACTCTGTTGCA
GCTCTAGTGCCTCGTGCTGAGATTGATGGTGATATTGGTGATAACCACGTTGGTCTGCAGGCTCGTATGATGAGTCAGGC
AATGCGTAAGCTTTCAGCCTCAATCAATAAAACCAAGACAATTGCGATCTTTATTAACCAGCTGCGTGAAAAGGTAGGGG
TTATGTTTGGTAATCCAGAGACGACACCAGGTGGTCGTGCTTTGAAATTCTATGCCTCTGTCCGTCTGGATGTTCGTGGA
ACAACACAAATAAAAGGAACTGGAGATCAAAAAGACAGTAGTATTGGTAAGGAAACCAAGATTAAGGTTGTTAAGAATAA
GGTTGCTCCGCCATTTAAGGTGGCTGAGGTTGAAATCATGTATGGAGAAGGCATCTCACGTACAGGTGAGCTGATTAAAA
TTGCTTCAGATTTAGACATTATTCAAAAGGCTGGTGCTTGGTTCTCTTATAACGGTGAAAAAATTGGTCAGGGCTCTGAA
AATGCCAAGAGATATTTGGCTGATCACCCAGAGCTGTTTGATGAGATTGACCATAAGGTGCGTGTTAAATTTGGCTTGCT
TGAAGATACTGAGGAAAGTGCAGCTGCAGATACAGTTGCAGCCAAAGCAGATGAGTTGGTTTTAGAGCTAGACGATGCCA
TTGAAATTGAGGATTAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(21-286)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2X4CGE9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Streptococcus pyogenes NZ131

93.915

100

0.939
  recA Streptococcus mutans UA159

88.773

100

0.899
  recA Streptococcus pneumoniae R6

84.974

100

0.868
  recA Streptococcus pneumoniae Rx1

84.974

100

0.868
  recA Streptococcus pneumoniae D39

84.974

100

0.868
  recA Streptococcus pneumoniae TIGR4

84.974

100

0.868
  recA Streptococcus mitis NCTC 12261

85.827

100

0.865
  recA Streptococcus mitis SK321

85.302

100

0.86
  recA Lactococcus lactis subsp. cremoris KW2

78.754

93.386

0.735
  recA Latilactobacillus sakei subsp. sakei 23K

70.536

88.889

0.627
  recA Bacillus subtilis subsp. subtilis str. 168

68.085

87.037

0.593
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.018

89.153

0.553
  recA Neisseria gonorrhoeae strain FA1090

59.429

92.593

0.55
  recA Neisseria gonorrhoeae MS11

59.429

92.593

0.55
  recA Neisseria gonorrhoeae MS11

59.429

92.593

0.55
  recA Vibrio cholerae O1 biovar El Tor strain E7946

59.366

91.799

0.545
  recA Vibrio cholerae strain A1552

59.366

91.799

0.545
  recA Acinetobacter baylyi ADP1

58.857

92.593

0.545
  recA Glaesserella parasuis strain SC1401

59.706

89.947

0.537
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.229

85.45

0.532
  recA Acinetobacter baumannii D1279779

61.231

85.979

0.526
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

59.517

87.566

0.521
  recA Helicobacter pylori strain NCTC11637

58.485

87.302

0.511
  recA Helicobacter pylori 26695

58.485

87.302

0.511
  recA Pseudomonas stutzeri DSM 10701

58.841

86.772

0.511
  recA Ralstonia pseudosolanacearum GMI1000

59.621

83.862

0.5

Multiple sequence alignment