Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   DQL78_RS00415 Genome accession   NZ_LS483306
Coordinates   82296..83342 (+) Length   348 a.a.
NCBI ID   WP_016250398.1    Uniprot ID   S1QZU7
Organism   Enterococcus cecorum strain NCTC12421     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 77296..88342
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL78_RS00395 (NCTC12421_00082) yfmH 77757..79046 (+) 1290 WP_016250402.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  DQL78_RS00400 (NCTC12421_00083) - 79233..80171 (+) 939 WP_016250401.1 helix-turn-helix domain-containing protein -
  DQL78_RS00405 (NCTC12421_00084) pgsA 80282..80860 (+) 579 WP_026209940.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  DQL78_RS00410 (NCTC12421_00085) cinA 80925..82169 (+) 1245 WP_016250399.1 competence/damage-inducible protein A Machinery gene
  DQL78_RS00415 (NCTC12421_00086) recA 82296..83342 (+) 1047 WP_016250398.1 recombinase RecA Machinery gene
  DQL78_RS00420 (NCTC12421_00087) rny 83560..85119 (+) 1560 WP_016250397.1 ribonuclease Y -
  DQL78_RS00425 (NCTC12421_00088) - 85337..85558 (+) 222 WP_016250396.1 helix-turn-helix transcriptional regulator -
  DQL78_RS00430 (NCTC12421_00089) - 85545..86306 (+) 762 WP_016250395.1 DUF3169 family protein -
  DQL78_RS00435 (NCTC12421_00090) - 86335..87234 (+) 900 WP_016250394.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 37456.62 Da        Isoelectric Point: 4.7667

>NTDB_id=1135709 DQL78_RS00415 WP_016250398.1 82296..83342(+) (recA) [Enterococcus cecorum strain NCTC12421]
MADDRKTALDAALKKIEKNFGKGSIMKLGEKADQQISTVPSGSLALDVALGVGGYPRGRIIEVYGPESSGKTTVALHAIA
EVQKQGGTAAFIDAEHALDPAYAKKLGVNIDELLLSQPDTGEQGLEIADALVSSGAVDIIVIDSVAALVPRAEIDGEMGD
THVGLQARLMSQALRKLSGTINKTKTIAIFINQIREKVGVMFGNPETTPGGRALKFYATVRLEVRRSEQLKQGSDIVGNR
TKIKVVKNKVAPPFKVAEIDIMYGEGISQEGELLDMAVDVDLVDKSGAWYSYNGERIGQGRENVKNYMKDHPEMVSELLV
KVRDAYGIGDGTTIEATEETEQETLDLE

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=1135709 DQL78_RS00415 WP_016250398.1 82296..83342(+) (recA) [Enterococcus cecorum strain NCTC12421]
ATGGCCGATGATCGTAAAACAGCCTTAGATGCTGCATTGAAAAAAATAGAAAAAAACTTTGGTAAAGGCTCTATCATGAA
GCTTGGTGAAAAAGCTGACCAACAAATCTCCACCGTACCAAGTGGCTCGCTAGCATTAGATGTCGCTTTAGGAGTAGGGG
GTTATCCAAGAGGGCGGATTATTGAAGTATACGGCCCAGAAAGTTCTGGTAAGACGACGGTTGCTTTACATGCGATTGCC
GAAGTTCAAAAACAAGGCGGAACTGCAGCCTTTATCGATGCCGAACACGCTTTAGATCCAGCCTATGCCAAAAAGCTAGG
CGTGAATATTGACGAATTACTTTTATCACAGCCAGATACCGGTGAACAAGGTCTAGAGATTGCTGATGCCCTTGTTTCTA
GTGGCGCGGTCGATATTATTGTCATTGACTCAGTTGCCGCTTTAGTGCCACGTGCCGAAATCGATGGCGAAATGGGGGAT
ACACACGTTGGGTTACAAGCCCGTTTAATGTCTCAAGCCCTACGTAAATTATCTGGTACGATTAATAAGACTAAGACTAT
TGCGATTTTTATCAACCAAATCCGTGAAAAAGTCGGTGTGATGTTTGGTAATCCAGAAACCACACCTGGTGGACGTGCCT
TGAAGTTCTATGCGACCGTTCGTTTAGAAGTGCGTCGTTCTGAACAATTAAAACAAGGTAGCGATATTGTCGGTAACCGT
ACCAAGATTAAAGTCGTGAAAAATAAAGTGGCGCCACCATTTAAAGTCGCTGAAATTGACATCATGTATGGCGAAGGAAT
TTCTCAAGAAGGGGAATTACTAGATATGGCGGTCGATGTTGATTTAGTTGATAAGAGTGGTGCTTGGTATTCGTACAATG
GTGAGCGAATTGGACAAGGTCGCGAAAATGTCAAAAACTATATGAAAGATCACCCAGAGATGGTCAGTGAGCTTTTAGTC
AAAGTTCGTGATGCCTATGGTATTGGTGATGGTACGACCATTGAAGCGACAGAAGAAACCGAACAAGAAACATTAGATTT
AGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB S1QZU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

81.098

94.253

0.764
  recA Bacillus subtilis subsp. subtilis str. 168

78.462

93.391

0.733
  recA Streptococcus pyogenes NZ131

68.627

100

0.704
  recA Streptococcus mitis SK321

70.145

99.138

0.695
  recA Streptococcus mitis NCTC 12261

69.452

99.713

0.693
  recA Streptococcus pneumoniae D39

69.565

99.138

0.69
  recA Streptococcus pneumoniae R6

69.565

99.138

0.69
  recA Streptococcus pneumoniae TIGR4

69.565

99.138

0.69
  recA Streptococcus pneumoniae Rx1

69.565

99.138

0.69
  recA Streptococcus mutans UA159

68.195

100

0.684
  recA Lactococcus lactis subsp. cremoris KW2

69.552

96.264

0.67
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.634

94.253

0.609
  recA Neisseria gonorrhoeae strain FA1090

61.449

99.138

0.609
  recA Neisseria gonorrhoeae MS11

61.449

99.138

0.609
  recA Neisseria gonorrhoeae MS11

61.449

99.138

0.609
  recA Ralstonia pseudosolanacearum GMI1000

64.329

94.253

0.606
  recA Acinetobacter baumannii D1279779

60.819

98.276

0.598
  recA Glaesserella parasuis strain SC1401

59.538

99.425

0.592
  recA Acinetobacter baylyi ADP1

60.058

98.563

0.592
  recA Vibrio cholerae O1 biovar El Tor strain E7946

63.272

93.103

0.589
  recA Vibrio cholerae strain A1552

63.272

93.103

0.589
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.31

94.54

0.589
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.909

94.828

0.578
  recA Pseudomonas stutzeri DSM 10701

61.3

92.816

0.569
  recA Helicobacter pylori 26695

59.816

93.678

0.56
  recA Helicobacter pylori strain NCTC11637

59.816

93.678

0.56

Multiple sequence alignment