Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   CHRYMOREF3P_RS10400 Genome accession   NZ_LR824569
Coordinates   2238844..2239845 (+) Length   333 a.a.
NCBI ID   WP_077418994.1    Uniprot ID   -
Organism   Chryseobacterium sp. JV274 strain F3_Prior isolate F3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2233844..2244845
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CHRYMOREF3P_RS10380 (CHRYMOREF3P_2161) - 2234788..2235708 (-) 921 WP_180564551.1 hypothetical protein -
  CHRYMOREF3P_RS10385 (CHRYMOREF3P_2162) - 2235849..2236190 (+) 342 WP_180564552.1 hypothetical protein -
  CHRYMOREF3P_RS10390 (CHRYMOREF3P_2163) - 2236250..2237434 (+) 1185 WP_180564553.1 oxygenase MpaB family protein -
  CHRYMOREF3P_RS10395 (CHRYMOREF3P_2164) - 2237529..2238167 (-) 639 WP_180564554.1 hypothetical protein -
  CHRYMOREF3P_RS10400 (CHRYMOREF3P_2167) recA 2238844..2239845 (+) 1002 WP_077418994.1 recombinase RecA Machinery gene
  CHRYMOREF3P_RS10405 (CHRYMOREF3P_2168) - 2240152..2241588 (-) 1437 WP_180564555.1 hypothetical protein -
  CHRYMOREF3P_RS10410 (CHRYMOREF3P_2169) - 2241740..2244640 (-) 2901 WP_180564556.1 alpha/beta hydrolase family protein -

Sequence

Protein


Download         Length: 333 a.a.        Molecular weight: 35884.24 Da        Isoelectric Point: 5.5619

>NTDB_id=1132366 CHRYMOREF3P_RS10400 WP_077418994.1 2238844..2239845(+) (recA) [Chryseobacterium sp. JV274 strain F3_Prior isolate F3]
MSNIDDKKKALALVLDKLDKTYGKGTVMTLGDQSIDNTIEVIPSGSLGVDIALGIGGYPKGRIIEIYGPESSGKTTLTLH
AIAEAQKAGGIAAFIDAEHAFDRTYAAKLGIDLENLIISQPDNGEQALEIADNLIRSGAIDIVVIDSVAALTPKAEIEGE
MGDSKMGLHARLMSQALRKLTATISRTKCTVIFINQLREKIGVMFGNPETTTGGNALKFYASVRIDIRKASAPIKQGDEA
IGSRVKVKIVKNKVAPPFKQAEFDIMYGEGVSKVGEILDTAVDMGIVKKSGSWFSYEETKLGQGRDAVKDVLKDNPDLSE
ELENKIKEEMKNK

Nucleotide


Download         Length: 1002 bp        

>NTDB_id=1132366 CHRYMOREF3P_RS10400 WP_077418994.1 2238844..2239845(+) (recA) [Chryseobacterium sp. JV274 strain F3_Prior isolate F3]
ATGAGTAACATTGATGATAAGAAAAAAGCACTCGCTTTAGTGCTTGACAAATTAGATAAAACATACGGAAAGGGAACTGT
AATGACTTTAGGTGATCAATCTATAGACAATACAATAGAAGTAATTCCTTCCGGTTCTTTAGGAGTAGATATCGCATTAG
GTATAGGTGGATATCCAAAAGGAAGAATCATTGAAATATACGGTCCTGAGTCTTCAGGTAAAACAACATTGACCCTTCAT
GCTATTGCTGAAGCTCAAAAAGCAGGTGGTATTGCTGCATTTATTGATGCAGAGCACGCTTTTGACAGAACATATGCTGC
TAAATTAGGAATTGATTTGGAGAACCTGATCATTTCTCAGCCAGACAATGGTGAGCAAGCTTTAGAAATTGCCGATAACC
TTATCCGTTCAGGGGCTATTGATATCGTTGTGATTGACTCTGTTGCAGCTCTTACGCCAAAAGCTGAGATCGAAGGTGAA
ATGGGAGATTCTAAAATGGGTCTTCATGCAAGATTGATGTCTCAGGCATTAAGAAAGCTTACGGCTACTATTTCAAGAAC
GAAATGTACAGTGATCTTCATCAACCAGTTGAGAGAAAAGATCGGGGTAATGTTCGGAAACCCTGAGACAACTACCGGAG
GTAACGCTCTTAAGTTCTATGCTTCTGTAAGAATTGATATCAGAAAAGCCAGTGCACCTATCAAACAAGGTGACGAAGCT
ATCGGTAGCCGTGTGAAAGTAAAGATTGTGAAAAACAAAGTAGCACCTCCTTTCAAGCAGGCAGAATTCGATATCATGTA
TGGTGAAGGAGTTTCTAAAGTAGGTGAGATCCTTGATACAGCAGTAGATATGGGAATTGTGAAGAAAAGCGGTTCTTGGT
TCAGCTACGAAGAGACTAAACTTGGTCAGGGACGTGATGCTGTAAAAGATGTATTAAAAGACAATCCTGATCTTTCCGAG
GAATTGGAAAACAAGATCAAAGAGGAAATGAAAAATAAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-272)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

79.58

100

0.796
  recA Acinetobacter baylyi ADP1

64.438

98.799

0.637
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.22

98.198

0.631
  recA Acinetobacter baumannii D1279779

63.804

97.898

0.625
  recA Glaesserella parasuis strain SC1401

63.497

97.898

0.622
  recA Helicobacter pylori strain NCTC11637

62.997

98.198

0.619
  recA Helicobacter pylori 26695

62.997

98.198

0.619
  recA Bacillus subtilis subsp. subtilis str. 168

62.577

97.898

0.613
  recA Neisseria gonorrhoeae MS11

62.229

96.997

0.604
  recA Neisseria gonorrhoeae MS11

62.229

96.997

0.604
  recA Neisseria gonorrhoeae strain FA1090

62.229

96.997

0.604
  recA Ralstonia pseudosolanacearum GMI1000

64.217

93.994

0.604
  recA Pseudomonas stutzeri DSM 10701

60.736

97.898

0.595
  recA Streptococcus pyogenes NZ131

60.55

98.198

0.595
  recA Streptococcus mitis SK321

60.429

97.898

0.592
  recA Streptococcus mitis NCTC 12261

60.429

97.898

0.592
  recA Lactococcus lactis subsp. cremoris KW2

59.816

97.898

0.586
  recA Vibrio cholerae O1 biovar El Tor strain E7946

58.967

98.799

0.583
  recA Vibrio cholerae strain A1552

58.967

98.799

0.583
  recA Streptococcus mutans UA159

59.327

98.198

0.583
  recA Streptococcus pneumoniae Rx1

59.077

97.598

0.577
  recA Streptococcus pneumoniae D39

59.077

97.598

0.577
  recA Streptococcus pneumoniae R6

59.077

97.598

0.577
  recA Streptococcus pneumoniae TIGR4

59.077

97.598

0.577
  recA Latilactobacillus sakei subsp. sakei 23K

58.514

96.997

0.568
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

55.828

97.898

0.547

Multiple sequence alignment