Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   HKD36_RS08285 Genome accession   NZ_LR792684
Coordinates   1626541..1627596 (-) Length   351 a.a.
NCBI ID   WP_170099377.1    Uniprot ID   -
Organism   Kyrpidia spormannii isolate FAVT5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1621541..1632596
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HKD36_RS08260 (FAVT5_1804) - 1622045..1623001 (-) 957 WP_170099375.1 dipeptidase -
  HKD36_RS08265 (FAVT5_1805) spoVS 1623110..1623370 (-) 261 WP_013075606.1 stage V sporulation protein SpoVS -
  HKD36_RS08270 (FAVT5_1806) - 1623498..1624310 (-) 813 WP_170099376.1 TIGR00282 family metallophosphoesterase -
  HKD36_RS08275 (FAVT5_1807) rny 1624355..1625884 (-) 1530 WP_100669318.1 ribonuclease Y -
  HKD36_RS08280 (FAVT5_1808) - 1626063..1626548 (-) 486 WP_170085609.1 regulatory protein RecX -
  HKD36_RS08285 (FAVT5_1809) recA 1626541..1627596 (-) 1056 WP_170099377.1 recombinase RecA Machinery gene
  HKD36_RS08290 (FAVT5_1810) - 1627768..1629348 (-) 1581 WP_100667740.1 DEAD/DEAH box helicase -
  HKD36_RS08295 (FAVT5_1811) cinA 1629353..1630624 (-) 1272 WP_170085611.1 competence/damage-inducible protein A Machinery gene
  HKD36_RS08300 (FAVT5_1812) pgsA 1630669..1631250 (-) 582 WP_170085612.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  HKD36_RS08305 (FAVT5_1813) rimO 1631251..1632579 (-) 1329 WP_170085613.1 30S ribosomal protein S12 methylthiotransferase RimO -

Sequence

Protein


Download         Length: 351 a.a.        Molecular weight: 37595.91 Da        Isoelectric Point: 5.1992

>NTDB_id=1130351 HKD36_RS08285 WP_170099377.1 1626541..1627596(-) (recA) [Kyrpidia spormannii isolate FAVT5]
MADRKAALDMALRQIEKQFGKGSIMKLGEAQASMNVEVVSTGALALDIALGVGGFPRGRVIEIYGPESSGKTTVALHAIA
EVQKVGGQAAFIDAEHALDPVYARNLGVNIDELLISQPDTGEQALEIAEALVRSGAVDIIVIDSVAALVPKAELEGDMGD
SHVGLQARLMSQALRKLSGAISKSRTIAIFINQIREKVGVMFGNPETTTGGRALKFYSSVRLEVRRAEALKQGNELVGNR
TRIKVVKNKVAPPFKQADVDIMFGEGISREGSIVDLGVEMDVIEKSGAWYSFEGERLGQGRENAKQFLKEHPEIADRIEG
KIRSLCHAEGSVGARPASGLIGSDEGEFFDE

Nucleotide


Download         Length: 1056 bp        

>NTDB_id=1130351 HKD36_RS08285 WP_170099377.1 1626541..1627596(-) (recA) [Kyrpidia spormannii isolate FAVT5]
GTGGCGGATCGGAAGGCGGCACTGGACATGGCGCTGCGCCAGATTGAGAAACAATTCGGGAAAGGTTCGATTATGAAACT
GGGAGAGGCCCAGGCGAGTATGAACGTCGAAGTGGTCTCTACCGGTGCTTTGGCGTTAGACATTGCTTTGGGGGTCGGTG
GATTCCCCCGGGGGCGTGTGATCGAGATTTACGGTCCGGAGTCTTCGGGCAAGACGACGGTGGCTTTGCACGCCATCGCC
GAGGTACAGAAGGTGGGCGGACAAGCGGCGTTTATCGATGCTGAGCACGCCTTGGACCCCGTGTATGCCCGCAATCTTGG
CGTCAACATCGATGAGCTGTTGATTTCCCAACCGGATACGGGGGAACAAGCTCTGGAGATCGCCGAGGCTTTGGTGCGCA
GCGGCGCAGTGGATATTATTGTGATTGACTCGGTGGCTGCGCTGGTTCCCAAAGCCGAACTGGAGGGGGACATGGGAGAT
TCCCACGTGGGTCTGCAGGCCAGACTCATGTCCCAAGCGTTGCGTAAGCTTTCCGGGGCGATTTCCAAGTCCCGGACGAT
CGCGATTTTTATCAACCAGATTCGGGAGAAAGTCGGCGTCATGTTCGGCAATCCCGAGACCACCACCGGTGGGCGGGCGC
TGAAGTTTTACTCCTCAGTGCGCCTGGAAGTGCGGCGAGCAGAGGCCCTCAAACAAGGGAACGAACTGGTCGGAAACCGG
ACTCGGATTAAGGTGGTAAAAAACAAGGTCGCCCCTCCTTTTAAACAAGCGGATGTGGACATCATGTTCGGGGAAGGAAT
CTCCCGGGAGGGCAGCATTGTCGATTTGGGAGTGGAGATGGATGTCATCGAAAAGAGCGGGGCCTGGTATTCCTTCGAAG
GTGAGCGATTGGGCCAGGGCCGGGAAAACGCCAAGCAATTTCTAAAGGAACACCCGGAGATCGCCGATCGTATCGAAGGA
AAGATTCGCAGCCTGTGCCACGCCGAGGGCTCGGTGGGGGCCCGCCCCGCATCGGGCTTGATCGGGTCGGACGAAGGTGA
GTTTTTCGATGAGTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

80.805

92.023

0.744
  recA Latilactobacillus sakei subsp. sakei 23K

72.36

91.738

0.664
  recA Streptococcus pneumoniae TIGR4

67.89

93.162

0.632
  recA Streptococcus pneumoniae Rx1

67.89

93.162

0.632
  recA Streptococcus pneumoniae R6

67.89

93.162

0.632
  recA Streptococcus pneumoniae D39

67.89

93.162

0.632
  recA Streptococcus mutans UA159

67.692

92.593

0.627
  recA Streptococcus mitis NCTC 12261

67.178

92.877

0.624
  recA Lactococcus lactis subsp. cremoris KW2

66.667

93.162

0.621
  recA Neisseria gonorrhoeae strain FA1090

66.667

93.162

0.621
  recA Neisseria gonorrhoeae MS11

66.667

93.162

0.621
  recA Neisseria gonorrhoeae MS11

66.667

93.162

0.621
  recA Streptococcus pyogenes NZ131

67.077

92.593

0.621
  recA Ralstonia pseudosolanacearum GMI1000

70.227

88.034

0.618
  recA Streptococcus mitis SK321

66.564

92.877

0.618
  recA Vibrio cholerae O1 biovar El Tor strain E7946

66.563

92.023

0.613
  recA Vibrio cholerae strain A1552

66.563

92.023

0.613
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.85

98.575

0.61
  recA Glaesserella parasuis strain SC1401

66.355

91.453

0.607
  recA Acinetobacter baumannii D1279779

62.349

94.587

0.59
  recA Pseudomonas stutzeri DSM 10701

63.665

91.738

0.584
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.691

93.162

0.584
  recA Acinetobacter baylyi ADP1

62.963

92.308

0.581
  recA Helicobacter pylori strain NCTC11637

62.733

91.738

0.575
  recA Helicobacter pylori 26695

62.422

91.738

0.573
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.241

94.587

0.57

Multiple sequence alignment