Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   HKD36_RS08295 Genome accession   NZ_LR792684
Coordinates   1629353..1630624 (-) Length   423 a.a.
NCBI ID   WP_170085611.1    Uniprot ID   A0A6F9E7N2
Organism   Kyrpidia spormannii isolate FAVT5     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1624353..1635624
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HKD36_RS08275 (FAVT5_1807) rny 1624355..1625884 (-) 1530 WP_100669318.1 ribonuclease Y -
  HKD36_RS08280 (FAVT5_1808) - 1626063..1626548 (-) 486 WP_170085609.1 regulatory protein RecX -
  HKD36_RS08285 (FAVT5_1809) recA 1626541..1627596 (-) 1056 WP_170099377.1 recombinase RecA Machinery gene
  HKD36_RS08290 (FAVT5_1810) - 1627768..1629348 (-) 1581 WP_100667740.1 DEAD/DEAH box helicase -
  HKD36_RS08295 (FAVT5_1811) cinA 1629353..1630624 (-) 1272 WP_170085611.1 competence/damage-inducible protein A Machinery gene
  HKD36_RS08300 (FAVT5_1812) pgsA 1630669..1631250 (-) 582 WP_170085612.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  HKD36_RS08305 (FAVT5_1813) rimO 1631251..1632579 (-) 1329 WP_170085613.1 30S ribosomal protein S12 methylthiotransferase RimO -
  HKD36_RS08310 (FAVT5_1814) - 1632668..1633159 (-) 492 WP_100669320.1 YajQ family cyclic di-GMP-binding protein -
  HKD36_RS08315 (FAVT5_1815) - 1633311..1633907 (-) 597 WP_100667744.1 YhcN/YlaJ family sporulation lipoprotein -
  HKD36_RS08320 (FAVT5_1816) - 1633988..1634779 (-) 792 WP_170099378.1 helix-turn-helix domain-containing protein -
  HKD36_RS08325 (FAVT5_1817) - 1634805..1635569 (-) 765 WP_100667746.1 DUF3388 domain-containing protein -

Sequence

Protein


Download         Length: 423 a.a.        Molecular weight: 45699.30 Da        Isoelectric Point: 6.0271

>NTDB_id=1130352 HKD36_RS08295 WP_170085611.1 1629353..1630624(-) (cinA) [Kyrpidia spormannii isolate FAVT5]
MKAEIIAVGTELLLGQIANTNARFVSEQLALAGVGVYFHTVVGDNRGRLLSVLQTARQRSDLVILCGGLGPTEDDLTRET
VAEFLGRPLELHPEALRAVEGYFSGLGRDMPENNRRQAMVIQGGNMIPNPRGTAPGQYVEAEGRRYVLLPGPPTELEPMV
RESVIPLVQTWMGGNETIRSRVLRLYGIGESHLAERIADLLAAPDNPTLAPLAAEGEVTLRLTARAASEKEAWERIAPLE
AELRRRLGRYIYGVDEETLEVAVGRVLQARGMTVATAESCTGGLLGEMITNVPGSSRYFVGGVISYSNDVKKAVLGVSGE
ILERLGAVSEPVAIQMAQGVAEHLGADWGIGITGIAGPDGGTETKPVGLVYIAVHHRNADSWVKEFRFRGDRRQVRIRAA
KAALFALWRKLGAMDEGLSPAER

Nucleotide


Download         Length: 1272 bp        

>NTDB_id=1130352 HKD36_RS08295 WP_170085611.1 1629353..1630624(-) (cinA) [Kyrpidia spormannii isolate FAVT5]
ATGAAGGCGGAAATCATCGCTGTGGGTACGGAACTCTTGCTGGGGCAGATTGCCAACACCAACGCCCGGTTCGTTTCGGA
ACAATTGGCTCTGGCGGGGGTTGGGGTATACTTCCATACAGTGGTGGGGGATAACCGAGGCAGGCTGTTGAGTGTGTTAC
AGACGGCCCGGCAGCGATCCGACCTCGTGATCTTGTGTGGCGGGTTGGGGCCGACCGAGGACGACTTGACCCGGGAGACG
GTGGCGGAGTTTCTCGGGCGGCCTTTAGAGCTTCACCCGGAAGCGCTTCGTGCGGTGGAAGGGTATTTTTCTGGGTTGGG
CCGGGACATGCCGGAAAACAATCGCCGCCAGGCCATGGTCATTCAGGGCGGGAACATGATTCCCAATCCCCGGGGAACGG
CGCCGGGACAGTATGTGGAGGCGGAGGGGCGGCGGTACGTCCTTTTACCCGGCCCCCCCACGGAGTTAGAACCCATGGTC
AGGGAATCGGTGATTCCGTTGGTGCAAACCTGGATGGGCGGGAACGAAACCATTCGTTCCCGGGTGCTTCGCCTTTACGG
GATCGGCGAATCACACCTGGCGGAACGGATCGCCGATTTGTTGGCCGCCCCAGATAACCCGACGCTGGCCCCTTTGGCCG
CCGAAGGGGAGGTCACTCTCCGGTTAACCGCCCGGGCTGCCTCGGAAAAAGAGGCGTGGGAGCGGATCGCGCCGCTGGAG
GCAGAGCTGCGCCGGCGCTTGGGGCGATATATCTACGGCGTCGACGAGGAAACCCTGGAGGTGGCCGTGGGGCGAGTTTT
ACAAGCCCGAGGAATGACCGTTGCCACCGCCGAGAGCTGCACCGGCGGGCTCCTGGGAGAGATGATCACCAACGTTCCTG
GGAGTTCCCGGTATTTTGTCGGCGGAGTGATATCGTATAGCAATGATGTGAAGAAAGCGGTTCTGGGCGTTTCCGGGGAG
ATCCTGGAACGGCTCGGAGCGGTGAGCGAACCGGTGGCCATCCAGATGGCTCAGGGAGTCGCCGAGCATCTCGGAGCGGA
CTGGGGAATTGGAATTACCGGGATCGCTGGGCCGGACGGCGGTACGGAGACAAAACCGGTGGGTTTGGTGTATATCGCAG
TCCATCATCGGAATGCGGATTCTTGGGTAAAAGAATTTCGATTTCGTGGAGACCGCCGCCAAGTGCGCATTCGGGCCGCC
AAAGCGGCACTGTTCGCCCTGTGGCGAAAACTCGGGGCGATGGATGAAGGGTTAAGTCCTGCAGAAAGGTGA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Competence-damaged protein (CinA)

(257-410)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6F9E7N2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

50.244

96.927

0.487
  cinA Streptococcus pneumoniae TIGR4

45.39

100

0.454
  cinA Streptococcus pneumoniae R6

45.154

100

0.452
  cinA Streptococcus pneumoniae Rx1

45.154

100

0.452
  cinA Streptococcus pneumoniae D39

44.917

100

0.449
  cinA Streptococcus mitis SK321

43.897

100

0.442
  cinA Streptococcus mitis NCTC 12261

43.897

100

0.442
  cinA Streptococcus mutans UA159

43.405

98.582

0.428
  cinA Streptococcus suis isolate S10

42.063

89.362

0.376

Multiple sequence alignment