Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   GPW69_RS00410 Genome accession   NZ_LR738724
Coordinates   67603..68754 (+) Length   383 a.a.
NCBI ID   WP_024388019.1    Uniprot ID   A0A0Z8LZS6
Organism   Streptococcus suis isolate 9401240     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 62603..73754
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPW69_RS00390 ruvA 64566..65156 (+) 591 WP_074391042.1 Holliday junction branch migration protein RuvA -
  GPW69_RS00400 - 65764..66333 (+) 570 WP_044692561.1 DNA-3-methyladenine glycosylase I -
  GPW69_RS00405 cinA 66370..67551 (+) 1182 WP_074391043.1 competence/damage-inducible protein A Machinery gene
  GPW69_RS00410 recA 67603..68754 (+) 1152 WP_024388019.1 recombinase RecA Machinery gene
  GPW69_RS00415 spx 68990..69388 (+) 399 WP_002939362.1 transcriptional regulator Spx -
  GPW69_RS00420 - 69488..69754 (+) 267 WP_002939360.1 IreB family regulatory phosphoprotein -
  GPW69_RS00425 ruvX 69754..70173 (+) 420 WP_002939356.1 Holliday junction resolvase RuvX -
  GPW69_RS00430 - 70185..70505 (+) 321 WP_002939343.1 DUF1292 domain-containing protein -
  GPW69_RS10765 - 70676..70798 (+) 123 WP_257048998.1 hypothetical protein -
  GPW69_RS00435 rpsJ 71007..71315 (+) 309 WP_002939332.1 30S ribosomal protein S10 -
  GPW69_RS00440 rplC 71387..72013 (+) 627 WP_011921686.1 50S ribosomal protein L3 -
  GPW69_RS00445 rplD 72038..72661 (+) 624 WP_004195490.1 50S ribosomal protein L4 -
  GPW69_RS00450 - 72661..72960 (+) 300 WP_004195491.1 50S ribosomal protein L23 -

Sequence

Protein


Download         Length: 383 a.a.        Molecular weight: 40846.57 Da        Isoelectric Point: 4.8910

>NTDB_id=1129576 GPW69_RS00410 WP_024388019.1 67603..68754(+) (recA) [Streptococcus suis isolate 9401240]
MAKKPGKKLEDITKKFGDERKKALDDALKSIEKDFGKGAVMRLGERAEQKVQVMSSGSLSIDIALGAGGYPKGRIIEIYG
PESSGKTTVALHAVAQAQKDGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSV
AALVPRAEIDGDIGDSHVGLQARMMSQAMRKLGASINKTKTVAIFINQLREKVGVMFGNPETTPGGRALKFYASVRMDVR
GNTQIKGTGDKKDQNVGKETKVKIVKNKVAPPFKEAVVEIMYGEGISRTGELIEIGSNLGIIQKAGAWYSYNGEKIGQGS
ENAKKFLADNPAIFDEIDRKIRIHYGLIEADGVEEVATEEAPVAAEEIQDVILDLDGGIELED

Nucleotide


Download         Length: 1152 bp        

>NTDB_id=1129576 GPW69_RS00410 WP_024388019.1 67603..68754(+) (recA) [Streptococcus suis isolate 9401240]
TTGGCTAAGAAACCAGGAAAAAAATTAGAAGATATTACAAAGAAATTTGGCGATGAGCGTAAAAAAGCGCTGGATGATGC
CCTAAAATCAATTGAAAAAGATTTTGGTAAGGGTGCTGTCATGCGTCTTGGTGAGCGTGCTGAGCAAAAAGTTCAAGTTA
TGAGTTCAGGTAGCTTGTCAATCGACATTGCGCTTGGAGCGGGTGGCTATCCGAAGGGCCGCATCATTGAGATTTACGGT
CCAGAGAGCTCAGGTAAGACAACTGTTGCTCTACACGCAGTAGCTCAAGCCCAGAAAGATGGCGGTATTGCTGCCTTTAT
CGATGCGGAGCATGCCTTGGATCCAGCCTATGCAGCAGCTCTTGGTGTCAATATTGATGAGTTGCTCTTGTCACAGCCAG
ACTCAGGAGAGCAGGGTCTTGAAATCGCTGGTAAGTTGATTGACTCTGGTGCTGTTGATTTGGTTGTTGTTGACTCGGTT
GCAGCCCTTGTACCACGTGCAGAAATTGACGGTGATATTGGTGATAGCCACGTTGGTTTGCAGGCTCGTATGATGAGTCA
GGCCATGCGTAAACTCGGTGCATCCATCAACAAAACAAAAACAGTAGCTATTTTCATTAACCAATTGCGTGAAAAAGTTG
GTGTCATGTTTGGTAACCCTGAAACAACGCCAGGTGGACGTGCGCTTAAATTCTATGCATCTGTCCGTATGGATGTTCGT
GGAAACACGCAAATCAAAGGAACAGGCGACAAGAAAGATCAAAACGTTGGTAAGGAAACCAAGGTGAAGATTGTGAAGAA
CAAGGTGGCTCCACCATTTAAAGAAGCTGTTGTTGAAATCATGTACGGTGAAGGAATTTCTCGCACAGGTGAATTGATTG
AGATTGGTAGCAACCTCGGTATCATCCAAAAAGCAGGTGCTTGGTATTCATATAATGGAGAGAAAATTGGCCAAGGTTCT
GAAAATGCTAAGAAATTCTTAGCAGATAATCCAGCAATCTTTGATGAAATTGACCGCAAGATTCGTATTCATTATGGCTT
GATTGAAGCAGATGGAGTTGAAGAGGTTGCGACCGAAGAAGCTCCTGTTGCTGCGGAAGAGATCCAAGATGTTATCCTAG
ATCTTGATGGCGGTATTGAATTAGAAGATTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(22-287)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0Z8LZS6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Streptococcus mutans UA159

85.677

100

0.859
  recA Streptococcus pyogenes NZ131

84.856

100

0.849
  recA Streptococcus pneumoniae D39

83.161

100

0.838
  recA Streptococcus pneumoniae R6

83.161

100

0.838
  recA Streptococcus pneumoniae TIGR4

83.161

100

0.838
  recA Streptococcus pneumoniae Rx1

83.161

100

0.838
  recA Streptococcus mitis NCTC 12261

83.246

99.739

0.83
  recA Streptococcus mitis SK321

82.461

99.739

0.822
  recA Lactococcus lactis subsp. cremoris KW2

75.143

91.384

0.687
  recA Latilactobacillus sakei subsp. sakei 23K

63.585

93.211

0.593
  recA Bacillus subtilis subsp. subtilis str. 168

68.085

85.901

0.585
  recA Acinetobacter baumannii D1279779

60.116

90.339

0.543
  recA Neisseria gonorrhoeae MS11

62.236

86.423

0.538
  recA Neisseria gonorrhoeae MS11

62.236

86.423

0.538
  recA Neisseria gonorrhoeae strain FA1090

62.236

86.423

0.538
  recA Pseudomonas stutzeri DSM 10701

57.224

92.167

0.527
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.479

87.206

0.527
  recA Acinetobacter baylyi ADP1

61.538

84.856

0.522
  recA Vibrio cholerae strain A1552

61.538

84.856

0.522
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.538

84.856

0.522
  recA Glaesserella parasuis strain SC1401

60.923

84.856

0.517
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.681

84.334

0.512
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.61

86.423

0.507
  recA Ralstonia pseudosolanacearum GMI1000

60.568

82.768

0.501
  recA Helicobacter pylori 26695

58.282

85.117

0.496
  recA Helicobacter pylori strain NCTC11637

58.282

85.117

0.496

Multiple sequence alignment