Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   FXZ10_RS07020 Genome accession   NZ_LR698965
Coordinates   1453508..1454569 (+) Length   353 a.a.
NCBI ID   WP_052651313.1    Uniprot ID   A0A098EL35
Organism   Planococcus massiliensis isolate MGYG-HGUT-01482     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1448508..1459569
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FXZ10_RS06995 ymfI 1448828..1449547 (+) 720 WP_052651309.1 elongation factor P 5-aminopentanone reductase -
  FXZ10_RS07000 - 1449738..1450535 (+) 798 WP_052651310.1 YmfK family protein -
  FXZ10_RS07005 - 1450544..1451422 (+) 879 WP_234398942.1 helix-turn-helix domain-containing protein -
  FXZ10_RS07010 pgsA 1451470..1452048 (+) 579 WP_052651311.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  FXZ10_RS07015 cinA 1452081..1453334 (+) 1254 WP_052651312.1 competence/damage-inducible protein A Machinery gene
  FXZ10_RS07020 recA 1453508..1454569 (+) 1062 WP_052651313.1 recombinase RecA Machinery gene
  FXZ10_RS07025 rny 1454804..1456363 (+) 1560 WP_052651314.1 ribonuclease Y -
  FXZ10_RS07030 - 1456430..1457227 (+) 798 WP_052651315.1 TIGR00282 family metallophosphoesterase -
  FXZ10_RS07035 - 1457376..1457801 (+) 426 WP_052651316.1 RicAFT regulatory complex protein RicA family protein -
  FXZ10_RS07040 - 1457890..1458033 (+) 144 WP_199876598.1 hypothetical protein -

Sequence

Protein


Download         Length: 353 a.a.        Molecular weight: 38210.39 Da        Isoelectric Point: 4.8344

>NTDB_id=1128710 FXZ10_RS07020 WP_052651313.1 1453508..1454569(+) (recA) [Planococcus massiliensis isolate MGYG-HGUT-01482]
MSDRKAALDMALKSIEKQFGKGSVMKLGEKSDYNVSSVSSGSLALDTALGIGGYPRGRVIEIYGPESSGKTTVSLHAIAE
VQATGGTAAFIDAEHALDPVYAKNLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDIVVVDSVAALVPKAEIEGEMGDS
HMGLQARLMSQALRKLSGIINKSNTIVIFINQIREKIGVMFGNPETTPGGRALKFYSSVRLEVRRAEALKSGSDIIGNRT
KIKIVKNKVAPPFRTAELDIMYGKGISREGEIVDIGSDLEIIQKSGSWYSYNDERIGQGRENVKQFLLANPEIRNEISNK
IRESYGMAAATYTIAANKDEEPEEFNLLIDEEE

Nucleotide


Download         Length: 1062 bp        

>NTDB_id=1128710 FXZ10_RS07020 WP_052651313.1 1453508..1454569(+) (recA) [Planococcus massiliensis isolate MGYG-HGUT-01482]
TTGAGCGATCGTAAAGCAGCGTTAGACATGGCGTTAAAAAGTATAGAAAAGCAGTTCGGTAAAGGATCTGTGATGAAATT
AGGCGAGAAAAGCGACTATAATGTATCATCGGTTTCGAGTGGTTCTTTGGCGCTTGATACTGCACTAGGAATAGGCGGTT
ATCCGCGTGGACGCGTTATCGAAATCTATGGACCTGAAAGTTCAGGTAAAACAACGGTTTCCCTTCACGCTATTGCAGAA
GTGCAAGCGACAGGCGGAACGGCTGCATTCATCGATGCAGAGCATGCGCTGGACCCTGTATACGCCAAAAATCTTGGCGT
GAATATTGATGAGTTGCTCCTATCTCAGCCAGATACTGGTGAGCAAGCCCTTGAAATTGCTGAAGCCCTCGTACGAAGCG
GCGCAGTAGATATCGTAGTAGTGGACTCCGTTGCTGCATTGGTACCGAAAGCCGAAATCGAAGGCGAAATGGGAGATTCC
CACATGGGATTGCAGGCGCGCCTGATGTCTCAAGCTCTTCGTAAATTGTCAGGGATCATCAACAAGTCAAATACGATTGT
GATCTTTATCAACCAGATTCGTGAAAAAATCGGCGTTATGTTCGGCAACCCGGAAACAACTCCAGGCGGCCGTGCATTGA
AATTCTACTCATCGGTACGATTGGAAGTTCGCCGTGCTGAAGCATTGAAGTCGGGTTCTGACATTATTGGTAACAGAACG
AAGATCAAGATTGTGAAAAACAAGGTGGCTCCGCCGTTCCGCACAGCGGAATTGGACATCATGTACGGCAAAGGGATTTC
CCGTGAAGGCGAAATCGTGGATATTGGATCAGACCTTGAAATTATCCAGAAGAGCGGTTCTTGGTATTCGTACAACGACG
AACGCATTGGCCAGGGCCGGGAAAATGTAAAGCAGTTCTTGCTTGCAAATCCGGAAATCCGCAACGAAATTTCAAACAAA
ATCCGTGAGTCTTACGGCATGGCAGCTGCAACGTATACGATTGCCGCCAATAAAGACGAAGAACCGGAAGAGTTCAATCT
TCTGATCGACGAAGAAGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A098EL35

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

82.875

92.635

0.768
  recA Latilactobacillus sakei subsp. sakei 23K

70.774

98.867

0.7
  recA Streptococcus mutans UA159

69.605

93.201

0.649
  recA Streptococcus mitis NCTC 12261

65.889

97.167

0.64
  recA Streptococcus pyogenes NZ131

68.902

92.918

0.64
  recA Streptococcus pneumoniae R6

64.571

99.15

0.64
  recA Streptococcus pneumoniae Rx1

64.571

99.15

0.64
  recA Streptococcus pneumoniae D39

64.571

99.15

0.64
  recA Streptococcus pneumoniae TIGR4

64.571

99.15

0.64
  recA Streptococcus mitis SK321

65.598

97.167

0.637
  recA Acinetobacter baylyi ADP1

63.897

98.867

0.632
  recA Neisseria gonorrhoeae MS11

64.08

98.584

0.632
  recA Neisseria gonorrhoeae MS11

64.08

98.584

0.632
  recA Neisseria gonorrhoeae strain FA1090

64.08

98.584

0.632
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.557

97.167

0.618
  recA Lactococcus lactis subsp. cremoris KW2

65.758

93.484

0.615
  recA Vibrio cholerae strain A1552

61.823

99.433

0.615
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.823

99.433

0.615
  recA Ralstonia pseudosolanacearum GMI1000

66.055

92.635

0.612
  recA Glaesserella parasuis strain SC1401

61.96

98.3

0.609
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.939

92.918

0.603
  recA Acinetobacter baumannii D1279779

61.877

96.601

0.598
  recA Helicobacter pylori 26695

63.385

92.068

0.584
  recA Helicobacter pylori strain NCTC11637

63.385

92.068

0.584
  recA Pseudomonas stutzeri DSM 10701

64.375

90.652

0.584
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

63.125

90.652

0.572

Multiple sequence alignment