Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   FXZ10_RS07015 Genome accession   NZ_LR698965
Coordinates   1452081..1453334 (+) Length   417 a.a.
NCBI ID   WP_052651312.1    Uniprot ID   A0A098EJM6
Organism   Planococcus massiliensis isolate MGYG-HGUT-01482     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1447081..1458334
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FXZ10_RS06990 yfmH 1447530..1448831 (+) 1302 WP_052651308.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  FXZ10_RS06995 ymfI 1448828..1449547 (+) 720 WP_052651309.1 elongation factor P 5-aminopentanone reductase -
  FXZ10_RS07000 - 1449738..1450535 (+) 798 WP_052651310.1 YmfK family protein -
  FXZ10_RS07005 - 1450544..1451422 (+) 879 WP_234398942.1 helix-turn-helix domain-containing protein -
  FXZ10_RS07010 pgsA 1451470..1452048 (+) 579 WP_052651311.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  FXZ10_RS07015 cinA 1452081..1453334 (+) 1254 WP_052651312.1 competence/damage-inducible protein A Machinery gene
  FXZ10_RS07020 recA 1453508..1454569 (+) 1062 WP_052651313.1 recombinase RecA Machinery gene
  FXZ10_RS07025 rny 1454804..1456363 (+) 1560 WP_052651314.1 ribonuclease Y -
  FXZ10_RS07030 - 1456430..1457227 (+) 798 WP_052651315.1 TIGR00282 family metallophosphoesterase -
  FXZ10_RS07035 - 1457376..1457801 (+) 426 WP_052651316.1 RicAFT regulatory complex protein RicA family protein -
  FXZ10_RS07040 - 1457890..1458033 (+) 144 WP_199876598.1 hypothetical protein -

Sequence

Protein


Download         Length: 417 a.a.        Molecular weight: 45530.76 Da        Isoelectric Point: 4.9350

>NTDB_id=1128709 FXZ10_RS07015 WP_052651312.1 1452081..1453334(+) (cinA) [Planococcus massiliensis isolate MGYG-HGUT-01482]
MNAEIIAVGSELLLGQITNSNARFLSNHLAELGINVYYHTVVGDNSERLKDTINIAENRADLIIFTGGLGPTKDDLTKET
IARHLGTTLEMDHEALDSIVAFFERAGRAMTENNKKQALVLKGSEVLVNHHGMAPGMLYKTETHTYMLLPGPPKEMEPMF
QYEAKPKLAKLLNQADVILSHVLRFYGIGEAELEDRIQDILEQQTNPTIAPLASDGEVTLRITAKTNTEEQAWKLIEEAK
ATLLERVGDYLYGYDNDSLASKAIDLLREQQKTISAAESLTAGLFQSELAAVAGASWVLAGGVITYNEEMKISQLGISSE
VLARFGVVSEETAVAMAQAVRSKFNTDISVSLTGAAGPDAHGDQPAGTVWIGIATEEETKAYRLQLSGMRNTNRLRAVKL
ALSYIIRTLTDGNARKI

Nucleotide


Download         Length: 1254 bp        

>NTDB_id=1128709 FXZ10_RS07015 WP_052651312.1 1452081..1453334(+) (cinA) [Planococcus massiliensis isolate MGYG-HGUT-01482]
ATGAATGCTGAAATAATTGCTGTAGGATCTGAACTGCTTCTCGGGCAGATTACGAATTCAAACGCCCGTTTTTTATCGAA
CCATTTAGCAGAGCTTGGAATTAATGTGTATTACCATACGGTAGTCGGCGATAATTCGGAGCGGTTGAAAGATACGATTA
ACATTGCGGAAAACCGAGCAGATCTGATTATTTTCACAGGCGGCTTAGGGCCGACCAAAGATGATTTGACGAAAGAAACG
ATAGCCCGCCATTTGGGGACGACGTTAGAGATGGACCATGAAGCGCTTGATTCCATCGTGGCCTTTTTCGAACGGGCTGG
GAGAGCGATGACGGAAAACAATAAAAAGCAGGCCTTGGTTTTAAAAGGCAGCGAGGTGCTGGTCAATCACCACGGGATGG
CACCGGGCATGCTTTATAAAACCGAAACGCATACGTATATGCTGCTGCCTGGGCCGCCTAAAGAAATGGAGCCGATGTTC
CAGTATGAAGCGAAGCCAAAGCTCGCTAAACTGCTGAATCAGGCAGACGTCATTTTGTCACACGTTTTGCGTTTTTATGG
CATTGGGGAAGCGGAACTTGAAGACCGCATCCAGGATATTTTAGAACAGCAGACGAATCCGACCATTGCGCCGCTTGCTT
CTGACGGGGAAGTGACGCTGCGGATTACAGCGAAAACGAATACGGAAGAGCAGGCCTGGAAGTTAATCGAGGAAGCGAAA
GCGACCCTGCTTGAACGTGTTGGCGACTACTTGTACGGCTATGACAATGATTCGCTCGCTTCGAAAGCGATTGATCTGCT
TCGTGAGCAGCAGAAGACCATATCAGCTGCCGAGAGCTTAACTGCTGGGCTGTTTCAATCTGAACTTGCGGCTGTAGCCG
GGGCGAGTTGGGTTTTGGCTGGCGGCGTTATCACCTATAATGAAGAAATGAAAATCAGCCAGTTGGGCATTTCAAGTGAA
GTGCTTGCCCGGTTCGGCGTTGTCAGCGAAGAAACTGCGGTTGCCATGGCTCAAGCGGTCCGTTCCAAATTCAACACGGA
CATCAGTGTCAGCCTAACCGGTGCTGCAGGACCGGACGCCCATGGCGACCAGCCTGCCGGCACCGTATGGATTGGCATTG
CAACGGAAGAAGAAACGAAAGCCTACCGGCTGCAATTATCCGGGATGCGCAATACGAATCGCCTCAGAGCCGTGAAATTG
GCATTGTCCTATATTATACGAACACTGACCGACGGAAATGCACGCAAAATTTAA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Competence-damaged protein (CinA)

(257-408)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A098EJM6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

53.563

97.602

0.523
  cinA Streptococcus mutans UA159

46.377

99.281

0.46
  cinA Streptococcus mitis SK321

45.107

100

0.453
  cinA Streptococcus mitis NCTC 12261

45.34

95.204

0.432
  cinA Streptococcus pneumoniae TIGR4

44.584

95.204

0.424
  cinA Streptococcus pneumoniae Rx1

44.332

95.204

0.422
  cinA Streptococcus pneumoniae R6

44.332

95.204

0.422
  cinA Streptococcus pneumoniae D39

44.081

95.204

0.42
  cinA Streptococcus suis isolate S10

38.52

94.005

0.362

Multiple sequence alignment