Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   FGK96_RS10110 Genome accession   NZ_LR594036
Coordinates   2093653..2094795 (-) Length   380 a.a.
NCBI ID   WP_138083412.1    Uniprot ID   -
Organism   Streptococcus porcinus strain NCTC10710     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2088653..2099795
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGK96_RS10085 (NCTC10710_02084) - 2090024..2091586 (-) 1563 WP_138083409.1 DUF2079 domain-containing protein -
  FGK96_RS10090 (NCTC10710_02085) - 2091712..2092017 (-) 306 WP_138083410.1 DUF1292 domain-containing protein -
  FGK96_RS10095 (NCTC10710_02086) ruvX 2092032..2092451 (-) 420 WP_003084867.1 Holliday junction resolvase RuvX -
  FGK96_RS10100 (NCTC10710_02087) - 2092448..2092717 (-) 270 WP_003083367.1 IreB family regulatory phosphoprotein -
  FGK96_RS10105 (NCTC10710_02088) spx 2092829..2093227 (-) 399 WP_138083411.1 transcriptional regulator Spx -
  FGK96_RS10110 (NCTC10710_02089) recA 2093653..2094795 (-) 1143 WP_138083412.1 recombinase RecA Machinery gene
  FGK96_RS10115 (NCTC10710_02090) cinA 2094885..2096144 (-) 1260 WP_138083413.1 competence/damage-inducible protein A Machinery gene
  FGK96_RS10120 (NCTC10710_02091) - 2096297..2096851 (-) 555 WP_138083414.1 DNA-3-methyladenine glycosylase I -
  FGK96_RS10125 (NCTC10710_02092) ruvA 2096855..2097448 (-) 594 WP_138083415.1 Holliday junction branch migration protein RuvA -
  FGK96_RS10130 (NCTC10710_02093) - 2097450..2098673 (-) 1224 WP_138083416.1 MDR family MFS transporter -

Sequence

Protein


Download         Length: 380 a.a.        Molecular weight: 40994.59 Da        Isoelectric Point: 4.7890

>NTDB_id=1127378 FGK96_RS10110 WP_138083412.1 2093653..2094795(-) (recA) [Streptococcus porcinus strain NCTC10710]
MAKKVKKTEEITKKFGDDRRKALDDALKNIEKDFGKGAVMRLGERAEQKVQVMSSGSLALDIALGAGGYPKGRIIEIYGP
ESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAASLGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVA
ALVPRAEIDGDIGDSHVGLQARMMSQAMRKLSASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYSSVRLDVRG
NTQIKGTGEQKDSNIGKETKIKVVKNKVAPPFKVAEVEIMYGEGISRTGELIKIASDLDVIQKAGAWFSYNGEKIGQGSE
NAKKFLADHPDIFEEIDHKVRVKVGLLEDDLEQEDIMETTSNQSTDELVLELDDAIEIED

Nucleotide


Download         Length: 1143 bp        

>NTDB_id=1127378 FGK96_RS10110 WP_138083412.1 2093653..2094795(-) (recA) [Streptococcus porcinus strain NCTC10710]
TTGGCAAAAAAAGTGAAGAAAACAGAAGAAATTACCAAAAAATTTGGCGATGATCGTCGTAAAGCTTTAGATGATGCTTT
AAAAAATATTGAGAAAGACTTCGGAAAAGGTGCAGTTATGCGTCTCGGAGAAAGGGCAGAGCAAAAGGTACAAGTTATGA
GCTCTGGAAGCCTTGCTTTGGACATTGCTTTAGGAGCGGGTGGCTATCCTAAGGGCCGTATTATCGAAATTTATGGGCCA
GAATCATCAGGTAAAACAACTGTTGCTCTCCATGCAGTTGCTCAGGCTCAAAAAGAAGGTGGAATTGCTGCTTTTATTGA
TGCTGAACATGCCTTGGATCCTGCGTATGCCGCTTCTTTAGGTGTTAACATTGATGAGTTGCTGCTGTCGCAGCCAGACT
CTGGAGAGCAAGGGCTTGAAATTGCAGGTAAATTAATTGACTCTGGTGCTGTTGATTTGGTAGTAGTGGATTCGGTTGCA
GCCTTAGTGCCACGTGCAGAAATTGATGGTGATATTGGGGATAGCCACGTTGGTTTGCAGGCTCGGATGATGAGTCAAGC
CATGCGTAAACTTTCGGCCTCTATCAATAAAACTAAAACGATTGCCATTTTTATTAACCAGTTACGTGAAAAAGTTGGAG
TTATGTTTGGTAATCCAGAAACAACGCCTGGTGGTCGAGCGCTGAAATTCTACTCTTCTGTTCGATTGGATGTTCGTGGA
AATACACAAATTAAAGGTACTGGTGAACAAAAAGATAGTAACATAGGGAAAGAAACTAAAATCAAAGTTGTTAAAAATAA
AGTTGCTCCGCCATTTAAGGTAGCCGAAGTGGAAATTATGTATGGAGAAGGTATTTCACGCACAGGTGAGTTGATTAAAA
TTGCTTCAGATTTAGATGTTATTCAAAAAGCGGGTGCTTGGTTCTCTTATAATGGCGAAAAAATCGGACAAGGTTCTGAG
AATGCTAAAAAATTCTTGGCCGATCACCCTGATATCTTTGAAGAAATTGATCATAAGGTACGTGTGAAAGTAGGTCTCTT
AGAAGATGACTTAGAGCAAGAAGACATTATGGAGACGACATCGAATCAAAGTACTGATGAGCTCGTTCTTGAGTTAGATG
ATGCTATTGAAATTGAAGATTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(21-286)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Streptococcus pyogenes NZ131

90

100

0.9
  recA Streptococcus mutans UA159

88.831

100

0.9
  recA Streptococcus pneumoniae R6

83.377

100

0.845
  recA Streptococcus pneumoniae Rx1

83.377

100

0.845
  recA Streptococcus pneumoniae D39

83.377

100

0.845
  recA Streptococcus mitis NCTC 12261

83.377

100

0.845
  recA Streptococcus pneumoniae TIGR4

83.377

100

0.845
  recA Streptococcus mitis SK321

83.465

100

0.837
  recA Lactococcus lactis subsp. cremoris KW2

77.299

91.579

0.708
  recA Latilactobacillus sakei subsp. sakei 23K

68.012

91.316

0.621
  recA Bacillus subtilis subsp. subtilis str. 168

69.605

86.579

0.603
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.404

90

0.553
  recA Neisseria gonorrhoeae strain FA1090

62.538

87.105

0.545
  recA Neisseria gonorrhoeae MS11

62.538

87.105

0.545
  recA Neisseria gonorrhoeae MS11

62.538

87.105

0.545
  recA Glaesserella parasuis strain SC1401

56.011

96.316

0.539
  recA Acinetobacter baylyi ADP1

60.923

85.526

0.521
  recA Acinetobacter baumannii D1279779

60.923

85.526

0.521
  recA Vibrio cholerae strain A1552

60.923

85.526

0.521
  recA Vibrio cholerae O1 biovar El Tor strain E7946

60.923

85.526

0.521
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.991

85

0.518
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.912

87.105

0.513
  recA Pseudomonas stutzeri DSM 10701

58.232

86.316

0.503
  recA Helicobacter pylori strain NCTC11637

57.576

86.842

0.5
  recA Helicobacter pylori 26695

57.576

86.842

0.5
  recA Ralstonia pseudosolanacearum GMI1000

59.306

83.421

0.495

Multiple sequence alignment