Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   FGK96_RS10115 Genome accession   NZ_LR594036
Coordinates   2094885..2096144 (-) Length   419 a.a.
NCBI ID   WP_138083413.1    Uniprot ID   -
Organism   Streptococcus porcinus strain NCTC10710     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2089885..2101144
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGK96_RS10085 (NCTC10710_02084) - 2090024..2091586 (-) 1563 WP_138083409.1 DUF2079 domain-containing protein -
  FGK96_RS10090 (NCTC10710_02085) - 2091712..2092017 (-) 306 WP_138083410.1 DUF1292 domain-containing protein -
  FGK96_RS10095 (NCTC10710_02086) ruvX 2092032..2092451 (-) 420 WP_003084867.1 Holliday junction resolvase RuvX -
  FGK96_RS10100 (NCTC10710_02087) - 2092448..2092717 (-) 270 WP_003083367.1 IreB family regulatory phosphoprotein -
  FGK96_RS10105 (NCTC10710_02088) spx 2092829..2093227 (-) 399 WP_138083411.1 transcriptional regulator Spx -
  FGK96_RS10110 (NCTC10710_02089) recA 2093653..2094795 (-) 1143 WP_138083412.1 recombinase RecA Machinery gene
  FGK96_RS10115 (NCTC10710_02090) cinA 2094885..2096144 (-) 1260 WP_138083413.1 competence/damage-inducible protein A Machinery gene
  FGK96_RS10120 (NCTC10710_02091) - 2096297..2096851 (-) 555 WP_138083414.1 DNA-3-methyladenine glycosylase I -
  FGK96_RS10125 (NCTC10710_02092) ruvA 2096855..2097448 (-) 594 WP_138083415.1 Holliday junction branch migration protein RuvA -
  FGK96_RS10130 (NCTC10710_02093) - 2097450..2098673 (-) 1224 WP_138083416.1 MDR family MFS transporter -
  FGK96_RS10135 (NCTC10710_02094) mutL 2098684..2100651 (-) 1968 WP_138083417.1 DNA mismatch repair endonuclease MutL -

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 45218.79 Da        Isoelectric Point: 4.8041

>NTDB_id=1127379 FGK96_RS10115 WP_138083413.1 2094885..2096144(-) (cinA) [Streptococcus porcinus strain NCTC10710]
MKAEIVTVGTEILTGQILNTNAQFLSEKMAEIGVDVFFQTAVGDNKARLLEVLSLASKRSDLVILCGGLGPTDDDLTKQT
LASFLDRDLIFDEEARDKLDSFFASRSQSSRTANNERQAQLIEGSIPIQNITGLAVGGLVESNGVSYVVLPGPPSELIPM
VNQQLLPILTVTQTKLYSRVLRFFGIGESQLVTVLGNIISEQTDPTIAPYAKIGEVTLRLSTKASGTIEADQKLDALEKA
ILATLSMEGIPLSQFFYGYGEDNSLSKEVVELLKKKKKKLTAAESLTAGLFQATLANFAGISEFFSGGFVTYSMLEKSRM
LNIPLSDLQANGVVSHYTAQAMAEKARLLTESDIGISLTGVAGPDSLEGHPAGTVFIGISTEEKTDSIQIIVGERSRSDI
RYIATLHAFNLVRKTLLKS

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=1127379 FGK96_RS10115 WP_138083413.1 2094885..2096144(-) (cinA) [Streptococcus porcinus strain NCTC10710]
ATGAAGGCGGAGATTGTTACAGTAGGTACAGAAATCTTAACTGGTCAAATTCTCAATACCAATGCTCAGTTTTTATCAGA
AAAAATGGCAGAGATAGGAGTTGATGTTTTTTTTCAAACAGCTGTTGGTGATAACAAAGCACGATTGCTAGAAGTTCTTT
CCCTTGCTAGTAAACGTAGCGATCTTGTTATTTTGTGTGGTGGACTTGGACCAACTGACGATGATTTAACGAAGCAAACC
TTAGCAAGTTTCTTGGACCGTGATTTGATTTTTGACGAAGAAGCTAGAGATAAATTGGATAGCTTTTTTGCTTCCCGATC
ACAAAGTTCACGAACTGCTAATAATGAGAGGCAGGCACAGTTGATTGAGGGTTCAATTCCTATTCAAAATATTACGGGGC
TAGCAGTCGGAGGATTAGTGGAAAGTAACGGTGTTTCTTATGTTGTTCTACCCGGACCACCTTCTGAATTAATACCAATG
GTAAATCAACAGTTGTTGCCTATACTGACTGTGACTCAGACAAAACTTTATTCGCGCGTATTACGTTTTTTTGGTATTGG
CGAAAGTCAACTAGTCACTGTTCTAGGGAATATCATCTCTGAGCAGACGGATCCCACAATTGCGCCATATGCCAAGATAG
GTGAAGTAACTCTCCGTCTATCAACTAAGGCTTCCGGAACGATAGAGGCTGATCAAAAGCTTGACGCACTTGAGAAAGCT
ATCTTAGCCACACTATCGATGGAAGGTATTCCTTTAAGTCAGTTTTTTTATGGCTATGGTGAAGACAATAGTTTATCAAA
GGAAGTTGTCGAGTTACTCAAGAAAAAAAAGAAAAAACTTACTGCAGCTGAGAGTTTAACAGCTGGACTTTTTCAGGCGA
CCTTGGCTAATTTTGCTGGGATATCTGAATTTTTCTCAGGTGGTTTTGTGACATACAGTATGTTAGAAAAGTCGAGGATG
TTGAATATTCCCCTATCTGACTTACAAGCTAATGGAGTGGTTAGCCACTATACAGCCCAAGCAATGGCCGAGAAAGCACG
CTTGTTAACTGAGTCGGATATAGGAATTAGTTTGACCGGTGTTGCAGGACCAGATTCCTTAGAGGGCCATCCGGCGGGGA
CTGTTTTTATTGGTATTTCGACAGAGGAGAAAACAGATTCTATTCAAATAATAGTTGGTGAACGAAGCCGTTCTGATATT
CGTTATATAGCAACGCTACATGCTTTTAATTTGGTCCGAAAAACTTTATTAAAAAGTTGA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)

Damage-inducible protein CinA KH domain (CinA_KH)

(178-245)

Competence-damaged protein (CinA)

(263-416)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis SK321

69.065

99.523

0.687
  cinA Streptococcus mitis NCTC 12261

68.345

99.523

0.68
  cinA Streptococcus pneumoniae TIGR4

68.345

99.523

0.68
  cinA Streptococcus pneumoniae Rx1

68.345

99.523

0.68
  cinA Streptococcus pneumoniae R6

68.345

99.523

0.68
  cinA Streptococcus mutans UA159

68.345

99.523

0.68
  cinA Streptococcus pneumoniae D39

68.106

99.523

0.678
  cinA Streptococcus suis isolate S10

51.683

99.284

0.513
  cinA Bacillus subtilis subsp. subtilis str. 168

46.172

99.761

0.461

Multiple sequence alignment