Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   FGL04_RS10310 Genome accession   NZ_LR594035
Coordinates   1996107..1997249 (-) Length   380 a.a.
NCBI ID   WP_138069089.1    Uniprot ID   A0A4U9ZPB0
Organism   Streptococcus pseudoporcinus strain NCTC5385     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1991107..2002249
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGL04_RS10285 (NCTC5385_02226) - 1992501..1994063 (-) 1563 WP_138069087.1 DUF2079 domain-containing protein -
  FGL04_RS10290 (NCTC5385_02227) - 1994191..1994496 (-) 306 WP_003084435.1 DUF1292 domain-containing protein -
  FGL04_RS10295 (NCTC5385_02228) ruvX 1994507..1994926 (-) 420 WP_077323211.1 Holliday junction resolvase RuvX -
  FGL04_RS10300 (NCTC5385_02229) - 1994923..1995192 (-) 270 WP_003083367.1 IreB family regulatory phosphoprotein -
  FGL04_RS10305 (NCTC5385_02230) spx 1995304..1995702 (-) 399 WP_138069088.1 transcriptional regulator Spx -
  FGL04_RS10310 (NCTC5385_02231) recA 1996107..1997249 (-) 1143 WP_138069089.1 recombinase RecA Machinery gene
  FGL04_RS10315 (NCTC5385_02232) cinA 1997339..1998598 (-) 1260 WP_138069090.1 competence/damage-inducible protein A Machinery gene
  FGL04_RS10320 (NCTC5385_02233) - 1998714..1999268 (-) 555 WP_138069091.1 DNA-3-methyladenine glycosylase I -
  FGL04_RS10325 (NCTC5385_02234) ruvA 1999275..1999868 (-) 594 WP_138069092.1 Holliday junction branch migration protein RuvA -
  FGL04_RS10330 (NCTC5385_02235) - 1999870..2001093 (-) 1224 WP_138069093.1 MFS transporter -

Sequence

Protein


Download         Length: 380 a.a.        Molecular weight: 41020.61 Da        Isoelectric Point: 4.6579

>NTDB_id=1127322 FGL04_RS10310 WP_138069089.1 1996107..1997249(-) (recA) [Streptococcus pseudoporcinus strain NCTC5385]
MAKKVKKTEEITKKFGDDRRKALDDALKNIEKDFGKGAVMRLGERAEQKVQVMSSGSLALDIALGAGGYPKGRIIEIYGP
ESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYADSLGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVA
ALVPRAEIDGDIGDSHVGLQARMMSQAMRKLSASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYSSVRLDVRG
NTQIKGTGEQKDSNIGKETKIKVVKNKVAPPFKVAEVEIMYGEGISRTGELIKIASDLDIIQKAGAWFSYNGEKIGQGSE
NAKKFLADNPDIFEEIDHKVRVKVGLLEDDLEQEEVVEPTLDQSTDELVLELDDAIEIED

Nucleotide


Download         Length: 1143 bp        

>NTDB_id=1127322 FGL04_RS10310 WP_138069089.1 1996107..1997249(-) (recA) [Streptococcus pseudoporcinus strain NCTC5385]
TTGGCAAAAAAAGTGAAGAAAACAGAAGAAATTACCAAAAAGTTTGGCGATGATCGTCGTAAAGCGTTAGATGATGCTTT
AAAAAATATTGAGAAAGACTTCGGGAAAGGTGCGGTTATGCGTCTCGGAGAAAGAGCTGAACAAAAGGTTCAAGTCATGA
GTTCAGGAAGTCTTGCTCTGGACATTGCTTTAGGTGCTGGAGGTTATCCTAAGGGCCGTATTATCGAAATTTACGGACCT
GAATCATCAGGTAAAACAACTGTTGCTCTCCACGCAGTTGCTCAGGCTCAAAAAGAAGGTGGAATTGCCGCTTTTATTGA
TGCTGAACATGCTCTAGATCCTGCCTATGCCGATTCTTTAGGTGTTAATATTGATGAGTTGCTCTTGTCGCAGCCGGATT
CAGGCGAGCAAGGACTTGAAATTGCAGGTAAATTAATTGACTCTGGTGCTGTTGATTTGGTTGTAGTAGACTCGGTCGCA
GCTTTAGTGCCACGTGCAGAAATTGACGGTGATATTGGGGATAGTCATGTTGGTTTGCAGGCTCGGATGATGAGTCAAGC
CATGCGTAAGCTTTCAGCTTCTATCAATAAAACTAAAACGATTGCTATTTTTATTAACCAGTTACGTGAAAAAGTGGGGG
TTATGTTTGGGAATCCGGAAACAACACCTGGTGGTCGTGCACTGAAATTCTACTCCTCTGTCCGACTGGATGTTCGTGGT
AATACACAGATTAAAGGCACTGGTGAGCAAAAAGACAGCAACATAGGTAAAGAGACCAAAATCAAAGTTGTTAAAAATAA
AGTTGCTCCTCCATTTAAAGTAGCTGAAGTGGAAATCATGTATGGAGAAGGTATTTCACGTACAGGGGAGTTAATTAAAA
TTGCTTCAGATTTAGACATTATTCAGAAAGCGGGCGCTTGGTTCTCTTATAATGGTGAAAAAATCGGGCAAGGTTCTGAG
AATGCTAAAAAATTCTTGGCAGATAATCCTGATATTTTTGAAGAAATCGATCATAAAGTGCGTGTGAAAGTAGGTCTCTT
AGAAGATGACTTAGAGCAAGAAGAAGTTGTGGAGCCTACATTAGACCAAAGTACTGATGAGCTAGTCCTCGAGTTGGATG
ATGCGATTGAAATTGAAGATTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(21-286)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4U9ZPB0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Streptococcus mutans UA159

89.091

100

0.903
  recA Streptococcus pyogenes NZ131

89.737

100

0.897
  recA Streptococcus mitis NCTC 12261

83.896

100

0.85
  recA Streptococcus mitis SK321

84.252

100

0.845
  recA Streptococcus pneumoniae D39

83.117

100

0.842
  recA Streptococcus pneumoniae Rx1

83.117

100

0.842
  recA Streptococcus pneumoniae R6

83.117

100

0.842
  recA Streptococcus pneumoniae TIGR4

83.117

100

0.842
  recA Lactococcus lactis subsp. cremoris KW2

77.299

91.579

0.708
  recA Latilactobacillus sakei subsp. sakei 23K

67.135

93.684

0.629
  recA Bacillus subtilis subsp. subtilis str. 168

70.213

86.579

0.608
  recA Neisseria gonorrhoeae strain FA1090

60.511

92.632

0.561
  recA Neisseria gonorrhoeae MS11

60.511

92.632

0.561
  recA Neisseria gonorrhoeae MS11

60.511

92.632

0.561
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.988

90

0.558
  recA Glaesserella parasuis strain SC1401

59.412

89.474

0.532
  recA Acinetobacter baylyi ADP1

61.538

85.526

0.526
  recA Acinetobacter baumannii D1279779

61.538

85.526

0.526
  recA Vibrio cholerae strain A1552

61.231

85.526

0.524
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.231

85.526

0.524
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.3

85

0.521
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

59.517

87.105

0.518
  recA Helicobacter pylori strain NCTC11637

55.524

92.895

0.516
  recA Helicobacter pylori 26695

55.524

92.895

0.516
  recA Pseudomonas stutzeri DSM 10701

56.358

91.053

0.513
  recA Ralstonia pseudosolanacearum GMI1000

59.621

83.421

0.497

Multiple sequence alignment